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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgttaaatactgttactgattttgtttgttagactatgtgatgctattgctaataagaaactatattttccag

Basic information

species Glycine max
transcript GLYMA11G10770.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g23810.2 (Oryza sativa), 5'ss of exon 4
GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgttaaatactgtt--actgattttgttt-gttagactatgtga-tgctatt--gctaataagaaactatattttccag---
|| || || || |||||| | |||||| |||||||||||||||| ||||||||   || ||   |  | | || ||   ||  |||| | | | |   || ||  | |   |||   ||  ||   |||||| | ||       
GCACTAAACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttgtattatatttctatttttcttgttttatctagctttgctctgaaaataacatttaactcttatctaactatctcttgatacag

upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 4
GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgttaaat----actgttactgattttgtttgt---tagactatgtgatgctattgctaataagaaactatattttccag
||  |||| ||||||||  |||||||||||||||| |||||||| |||||||||||||| || |||| |       |  |    | |||   ||    || || |   |  |    | || ||   |   |  || ||  ||
GCATTGAACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgttagacttaggtttctgtcaaatttaaatgggaataaacaaaaagtgggctcttctgatggaatgtttaatgttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166168|gb|HO009139.1|HO009139
EST:     AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT                         ATTACCAGATGGTTCGCTGATGGAGAT
genomic: AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgtt ... tattttccagATTACCAGATGGTTCGCTGATGGAGAT
EST: gi|192307619|gb|FG999658.1|FG999658
EST:     AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT                         ATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
genomic: AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgtt ... tattttccagATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
EST: gi|9986202|gb|BE660310.1|BE660310
EST:     AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT                         ATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
genomic: AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgtt ... tattttccagATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
EST: gi|7796512|gb|AW781909.1|AW781909
EST:     AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT                         ATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
genomic: AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgtt ... tattttccagATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
EST: gi|298168738|gb|HO009668.1|HO009668
EST:     AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT                         ATTACCAGATGGTTCGCTGATGGAGATTA
genomic: AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgtt ... tattttccagATTACCAGATGGTTCGCTGATGGAGATTA
EST: gi|192306220|gb|FG995056.1|FG995056
EST:     AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT                         ATTACCAGATGGTTCGCTGATGGAGATTACCTAAGTTTATCCATTGGATGC
genomic: AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgtt ... tattttccagATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
EST: gi|15204411|gb|BI427179.1|BI427179
EST:     AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT                         ATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
genomic: AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgtt ... tattttccagATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
EST: gi|9899327|gb|BE608295.1|BE608295
EST:     AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT                         ATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
genomic: AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgtt ... tattttccagATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
EST: gi|19053059|gb|BM731726.1|BM731726
EST:     AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT                         ATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC
genomic: AATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgtt ... tattttccagATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGC