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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGTAAGAATCACTCCAAATCAGAATATCATCTTGACTGATGTTCGTGCTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtttacagcttaatgtctactaattatatacaatttttgtttacagattatacttttaaattttatttgttttctgtgttgaacaatgtttgt...

Basic information

species Glycine max
transcript GLYMA11G09890.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193352782|gb|FK317290.1|FK317290
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
EST: gi|9903367|gb|BE612335.1|BE612335
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
EST: gi|193513428|gb|FK471536.1|FK471536
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCT
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCT
EST: gi|27809358|gb|CB063780.1|CB063780
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
EST: gi|120533624|gb|EH261757.1|EH261757
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
EST: gi|9903129|gb|BE612097.1|BE612097
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
EST: gi|207803162|gb|GD775285.1|GD775285
EST:     CTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
genomic: CTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
EST: gi|15000299|gb|BI321113.1|BI321113
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
EST: gi|8283363|gb|BE020924.1|BE020924
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
EST: gi|207760127|gb|GD730874.1|GD730874
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACATAACAGCAACGGCATGCCCTGCT
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
EST: gi|10232272|gb|BE801160.1|BE801160
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
EST: gi|193311958|gb|FK276918.1|FK276918
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACA
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACA
EST: gi|254326624|gb|GR841216.1|GR841216
EST:     CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTG                         CAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT
genomic: CTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtt ... ctgtgaacagCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATGTAAGAATCACTCCAAATCAGAATATCATCTTGACTGATGTTCGTGCTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGgtgagatgtttacagcttaatgtctactaattatatacaatttttgtttacagattatacttttaaattttatttgttttctgtgttgaacaatgtttgt

- - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG