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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtctttatttgatcggtgtttttttggctgagtgagcttaaatttatgattatcttcatgagtaaggatgaaatcagagccaaataatgtgaattg...

Basic information

species Glycine max
transcript GLYMA11G09790.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09790.3 (Glycine max), 5'ss of exon 4
lower sequence: AT5G17060.1 (Arabidopsis thaliana), 5'ss of exon 5
ACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgta------tgtctttatttgatcggtgtttttttggc-tgagtgagcttaaatttatgattatcttcatgagtaaggatgaaatcagagccaaataatgtgaattg
   |||||||| || ||||| |||||  ||||||||||  |||||||||| |||||||||||| |||||      | | ||  |||| |   ||||| |||  | |  |||    ||| |     |||  |||| | | |  |   || || ||                   
GAGATCATAAAAGACCCATTCATGCTAAACAGTATCATTCTGGTGTTTGCAAACAAACAGGACATGgtaattcgatattttcttttggtttttgtttgtttctcgtctgtgcttataattcctcaattcacttctttactctgctggatattag-------------------

upper sequence: GLYMA11G09790.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0039g02240.t01 (Vitis vinifera), 5'ss of exon 5
ACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgt--ctttatttgatcggtgttt--ttttggctgagtgagctta---aatttatgattatcttcatgagtaaggatgaaatcagagccaaataatgtgaattg
 | |||||    ||||||||||||||  ||||  |||||||| | ||||| |||||||||||| ||||||||  | ||| | |||   || ||  ||||   | |    ||| |   ||  ||| |            | ||  | | | || |  | ||   |         
GCCATCATTCGAGATCCATTTATGCTGAACAGCGTCATCTTGATTTTTGCAAACAAACAGGACATGgtatgttgcattagtggattcttgattgtttttttttaatcttgctcatgaaagatataaaagcacatgaaggaaaacacggattctggtctaacacaga-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016117|gb|CX702859.1|CX702859
EST:     CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttt ... tctttacaagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|23729125|gb|BU762647.1|BU762647
EST:     CATTTATGCTCCACAGTATCATCTTGGTGTTTGTCTTCAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttt ... tctttacaagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|192303487|gb|FG995921.1|FG995921
EST:     CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttt ... tctttacaagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|192334432|gb|FK024447.1|FK024447
EST:     CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttt ... tctttacaagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|58015262|gb|CX702004.1|CX702004
EST:     CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttt ... tctttacaagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|14259783|gb|BG882691.1|BG882691
EST:     CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttt ... tctttacaagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|31459239|gb|CD401267.1|CD401267
EST:     CCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CCAACAAACAGGACCTGgtatgtcttt ... tctttacaagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|58014737|gb|CX701479.1|CX701479
EST:     CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCT-                         ---GGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttt ... tctttacaagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|21479719|gb|BQ576402.1|BQ576402
EST:     CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttt ... tctttacaagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT