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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGTGGCTTACAGAACCTTGGGTTTGACAATTTTCATCTTGGAGTTTTGTGCTTGATAGGGAACTGCATTTGCATGGCTGCATTTCTAGCCATTCAGgtatgtatctttttgtcatatgcattaagtgactacccatttagtgatcaatgtcacattttgcctgttacccatttactatggccaacttctatgtgcc...

Basic information

species Glycine max
transcript GLYMA11G09520.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09520.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G45870.2 (Arabidopsis thaliana), 5'ss of exon 3
---AATTGGTGGCTTACAGAACCTTGGGTTTGACAATTTTCATCTTGGAGTTTTGTGCTTGATAGGGAACTGCATTTGCATGGCTGCATTTCTAGCCATTCAGgtatgtatctttttgtcatatgcattaagtgactacccatttagtgatcaatgtcacattttgcctgttacccatttactatggccaacttctatgtgcc-
    ||   ||||||    ||   |||  |||     |   || | ||||||||||| ||||| ||||| |||| |||||||||||| ||||| || ||||||| ||||   ||| |   | |||    |       || | || |||     || ||   || |   ||  ||  |  |   ||    ||| | ||||  |  
CTTCATGTCTGGCTTTTTTAA---TGGACTTGGGCGATGGAATTTGGGAGTTTTGTGTTTGATTGGGAATTGCACTTGCATGGCTGCTTTTCTTGCTATTCAGgcatgtcattttcttctagatgatcca------cacactttcagtttcagatatcttcttgtctttgg-actgaccttgcatttgaaacatatatgatcag

upper sequence: GLYMA11G09520.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G19185.1 (Arabidopsis thaliana), 5'ss of exon 4
AATTGGTGGCTTACAGAACCTTGGGTTTGACAATTTTCATCTTGGAGTTTTGTGCTTGATAGGGAACTGCATTTGCATGGCTGCATTTCTAGCCATTCAGgtatgtatctttttgtcatatgcattaagtgactacccatttagtgatcaatgtcacattttgcctgttacccatttactatggccaacttctatgtgcc-------------------
| |   ||| || |   | ||||| |||||  | |  ||  |||||||||| |||||||| || |||||||| || |||||| | ||||| ||||||||||||  | ||||  |    | ||  |    ||  ||    |||||         | |  |   ||||  || ||  |    |||      ||  |||||                     
AGTCTCTGGTTTTCTCGATCTTGGATTTGAGCAATGGCACATTGGAGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGgtaaatctcttcattgtttttgtttcttatggtta--ggtttagaccaacgcataaactgcagcctactaacctctgtgcatgtgtc-ttttaatgtggatataatggaaactctccag