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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAgtaagaaccaacttgctctttcatgttctgatcttgtttatggctctgaaataaaagtcttttttatatatgcagttttgtatctatgccttgtgtagcc...

Basic information

species Glycine max
transcript GLYMA11G09370.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09370.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 4
GTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAgtaaga--accaacttgctctttcatgttc---tgatcttgtttatggctctgaaataaaagtcttttttatatatgcagttttgtatctatgccttgtgtagcc
||||||||||| ||| | |||||||||||||||||||| || ||||| || ||||| ||  |  | ||| |   ||||  |||   || | |   ||||||      | | |  |  ||  |  ||||  |  |||||  |  |    |  |||    
GTGACTTCATGCAAACTGTGGCGGCAAGTGGGAGAGTCCTTTAAACCCCCAAAgtatgataattagcttacatattcaaattccattgctttgtcttatggagtgatagttattgctttgctgctataaaccattttgcctaga-aattgatgt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208174528|gb|GD969973.1|GD969973
EST:     ACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAA                         GACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAG
genomic: ACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAgtaagaacca ... accgatgcagGACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAG
EST: gi|208124142|gb|GD921978.1|GD921978
EST:     ACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAA                         GACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAG
genomic: ACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAgtaagaacca ... accgatgcagGACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAG