Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATGTTGAAGTTTTCGGCAATTGAGATTTATAATGAATCTGTAAGGGACCTCCTTAGTCCAGACTGTACCCCTCTCAGACTTCTCGATGATCCAGAGgtatgcatcttcatcattttctacagaactagtatttgtgcattttacttacagtttgttaatttaacag

Basic information

species Glycine max
transcript GLYMA11G07950.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07950.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g43400.4 (Oryza sativa), 5'ss of exon 4
ATTCATGTTGAAGTTTTCGGCAATTGAGATTTATAATGAATCTGTAAGGGACCTCCTTAGTCCAGACTGTACCCCTCTCAGACTTCTCGATGATCCAGAGgtatgcatcttcatcattttctacagaactagtatttgtgcat--tttacttacagtttgtt--aattta-acag-----------------------------------------
|||||| ||||  ||||||||||| ||||| || |||||| |||| ||||||||||| || |  |||   || || ||||||||||| |||||||| ||||||  |    |  ||   || |||     |    ||  | |||  | |  ||    |||  |  ||  |  | |                                          
ATTCATTTTGAGATTTTCGGCAATAGAGATATACAATGAAGCTGTGAGGGACCTCCTGAGCCACGACACCACACCCCTCAGACTTCTTGATGATCCGGAGgtacactcactgttctccttttactagcttgaacttactacataatctgtttgtgttttcctccaacctgtatactgttctcgagttgttcatgtttccatttgatttcaaaacag