1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattgggacttgtaattttagtatatacttgttgtaaaacactattgattgttttttctacttctag
species | Glycine max |
transcript | GLYMA11G07910.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TACTTCCTTGATTGG GGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCEST: gi|23052777|gb|BU577268.1|BU577268
genomic: TACTTCCTTGATTGGgtgagtattg ... ctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
EST: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGG GGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCEST: gi|213595247|gb|DB963980.1|DB963980
genomic: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattg ... ctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
EST: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGG GGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCEST: gi|7233548|gb|AW568953.1|AW568953
genomic: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattg ... ctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
EST: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGG GGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCEST: gi|193569709|gb|FK523562.1|FK523562
genomic: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattg ... ctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
EST: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGG GGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCEST: gi|193559721|gb|FK515010.1|FK515010
genomic: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattg ... ctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
EST: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGG GGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGC
genomic: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattg ... ctacttctagGGG-ACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattgggacttgtaattttagtatatacttgttgtaaaacactattgattgttttttctacttctag
- - - - - - - - - - - - - - - - - - - CAGATG