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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgtggatttttcagttaccgtgttttgtggtttaatctatgggatattccgttcgttagtgtttttttctgtttatattctggcatacccttt...

Basic information

species Glycine max
transcript GLYMA11G07810.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566190|gb|AW233826.1|AW233826
EST:     CATCCCCATATCTACAGTAACGGCCACATTTGTTTAG                         ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
genomic: CATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: gi|6725714|gb|AW310113.1|AW310113
EST:     TCCGGTTCCGCTGCATCCCCATATCTACAGTANCGGCCACATTTGTTTAG                         ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: gi|15664873|gb|BI702244.1|BI702244
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG                         ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: gi|16343412|gb|BI969007.1|BI969007
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG                         ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: gi|151393796|gb|EV263671.1|EV263671
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG                         ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: gi|254317299|gb|GR826244.1|GR826244
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG                         ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: gi|10238896|gb|BE807792.1|BE807792
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG                         ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: gi|254317300|gb|GR826245.1|GR826245
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG                         ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: gi|14516420|gb|BI095092.1|BI095092
EST:     CCGGGTCCGGTGCATCCCCATATGTACAGTAACGGCCAACATTTGTTTAG                         ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
genomic: CCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCC-ACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA