1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GAAATTTGCAGGTCGCTCTGTTGCAGACAAGTTGAAAGATTTGAGAAAAAAGCTTGTACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAAgtaagatcatcctctctataactcttccttttaatttcttttcccttgacacaaattttctgagtttgaggctactttctgccgcccttgttcatttttaagatagctttctttattttttcacttcatttccaataacctgactacaatacag
species | Glycine max |
transcript | GLYMA11G06900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTTGTACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAA GTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTAEST: gi|21639096|gb|BM140142.1|BM140142
genomic: AGCTTGTACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAAgtaagatcat ... tacaatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTA
EST: ACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAA GTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTTEST: gi|213619480|gb|DB963418.1|DB963418
genomic: ACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAAgtaagatcat ... tacaatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTT
EST: AGCTTGTACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAA GTTGCATGGTTGTA
genomic: AGCTTGTACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAAgtaagatcat ... tacaatacagGTTGCATGGTTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATTTGCAGGTCGCTCTGTTGCAGACAAGTTGAAAGATTTGAGAAAAAAGCTTGTACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAAgtaagatcatcctctctataactcttccttttaatttcttttcccttgacacaaattttctgagtttgaggctactttctgccgcccttgttcatttttaagatagctttctttattttttcacttcatttccaataacctgactacaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG