1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAGgttagttatattgactcccaaatcttttcatcctattattatcaattagaagctaactgttggatccttcctctcctccccccattccctgtcccgttttcttgccttttcaatcaatgcag
species | Glycine max |
transcript | GLYMA11G06650.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CACATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAG CCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAEST: gi|5510276|gb|AI856660.1|AI856660
genomic: CACATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAGgttagttata ... atcaatgcagCCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTA
EST: CACATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAG CCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAEST: gi|193464302|gb|FK434078.1|FK434078
genomic: CACATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAGgttagttata ... atcaatgcagCCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTA
EST: CGCATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAG CCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTA
genomic: CACATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAGgttagttata ... atcaatgcagCCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAGgttagttatattgactcccaaatcttttcatcctattattatcaattagaagctaactgttggatccttcctctcctccccccattccctgtcccgttttcttgccttttcaatcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA