1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTTGGGGAAGTGGTAGCTGTAACAGGTGATGGAACTAATGATGCCCCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAGgtgagtgcaatgctatgcaatgtttccctttgtgaaccattcattctacccaccaaaggaaaagaaaaggaaatgttgtgctgctacattttagtcacttaactcttaattttgtactgcaagctaatttcttaatatatgttcag
species | Glycine max |
transcript | GLYMA11G05190.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CACTTCATGAAGCTGACATTGGACTTGCAATGGGCATTGCTGGAACTGAG GTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACGEST: gi|105633721|gb|DW247084.1|DW247084
genomic: CCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAGgtgagtgcaa ... atatgttcagGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACG
EST: CCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAG GTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACGEST: gi|17519533|gb|BM188575.1|BM188575
genomic: CCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAGgtgagtgcaa ... atatgttcagGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACG
EST: CCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAG GTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACGEST: gi|17518979|gb|BM188021.1|BM188021
genomic: CCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAGgtgagtgcaa ... atatgttcagGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACG
EST: CCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAG GTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACGEST: gi|13240205|gb|BG359514.1|BG359514
genomic: CCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAGgtgagtgcaa ... atatgttcagGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACG
EST: CCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAG GTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACG
genomic: CCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAGgtgagtgcaa ... atatgttcagGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGGGGAAGTGGTAGCTGTAACAGGTGATGGAACTAATGATGCCCCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAGgtgagtgcaatgctatgcaatgtttccctttgtgaaccattcattctacccaccaaaggaaaagaaaaggaaatgttgtgctgctacattttagtcacttaactcttaattttgtactgcaagctaatttcttaatatatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA