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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTAACGTATGTGCTTCTTCCAATGCCTTTGCTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactcttatgcttgaatataattaaaaagtaagatcattctacttttatcatacaacttcttaacttagttttatctacattcaagttagatttggattttatcagacaagaaactaaaaatatgggggattaatctttcaaccttttcttttgtggtcttgtaaatgatggagcag

Basic information

species Glycine max
transcript GLYMA11G04420.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04420.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0012g00600.t01 (Vitis vinifera), 5'ss of exon 4
TGTTAACGTATGTGCTTCTTCCAATGCCTTTGCTGTTCTTTGCGGGGTCTGATGATTCTA---TATTTTCTGAATCTGATAATAGgtaaac--tcttatgcttgaa-tataattaaaaagtaagatcattctacttttatcatacaacttcttaacttagttttatctacattcaagttagatttggattttatcagacaagaa-actaaaaatatgggggattaatctttcaaccttttcttttgtggtcttgtaaatgatggagcag
|  ||| |||||| |||||||| |||||||||||||||||||| ||||||||   ||||    | |||||||||||||  ||||||| | |  | || | ||| || | ||||| |  | |||      | ||| ||| || |  || ||   |||||   |||    |  || |  ||    ||| |||| | |   |  | | || |                                                            
TAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAGgttagccattttctacttaaaatttaatttacgattaa---tgctttacctttctctt--aatttaaaaacttgaatttgctcattttaattttgttgttgcatttgaacctccgtgtataccag-----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408863|gb|EV278671.1|EV278671
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|12773182|gb|BG238109.1|BG238109
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|298183465|gb|HO028678.1|HO028678
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|31306393|gb|CD391596.1|CD391596
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|192298731|gb|FG990997.1|FG990997
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|192312780|gb|FK003992.1|FK003992
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|298197449|gb|HO044928.1|HO044928
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|192295310|gb|FG985964.1|FG985964
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|192312779|gb|FK003991.1|FK003991
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|192332695|gb|FK025352.1|FK025352
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|254318802|gb|GR830366.1|GR830366
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|298196857|gb|HO041600.1|HO041600
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|298180781|gb|HO022220.1|HO022220
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|208325806|gb|GE124514.1|GE124514
EST:     TGTTCTTTGGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: TGTTCTTT-GCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|10848287|gb|BF071708.1|BF071708
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT