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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTCATGGGTCCAATGTTCAAGGGCTAGAAACAACTGCAACGTTTGATCCCAAAACAGACGAATTTGTTATCCATAGCCCCACATTGACTTCCAGCAAAgtgagtgaaatgggttatcactcctgtgagcctttactggtcttttactatttttaaccgtttaagattctacatcttacaatgttaccaagtgctttaa...

Basic information

species Glycine max
transcript GLYMA11G03800.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03800.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G16760.2 (Arabidopsis thaliana), 5'ss of exon 4
GGGTCATGGGTCCAATGTTCAAGGGCTAGAAACAACTGCAACGTTTGATCCCAAAACAGACGAATTTGTTATCCATAGCCCCACATTGACTTCCAGCAAAgtgagtgaaatgggttatcactcctgtgagcctttactggtcttttactatttttaaccgtttaagattctacatcttacaatgttacc-aagtgctttaa
 |||||||| || ||||||||||| || || |||||||| || ||||||||||| || || || ||||| || || |  || ||   |||| |   |||||| |||  |    |    |  |  | ||||  ||      |       |  | ||    || ||||||| | |||||  |    ||     | |       
TGGTCATGGCTCAAATGTTCAAGGACTTGAGACAACTGCCACATTTGATCCCAAGACTGATGAGTTTGTAATTCACACTCCAACTCAGACTGCATCCAAAgtaagtataccaagaagcctttgat-tgagtatt-----atgcacagtttctcttggttgtgtaagatttt-catctgtcttgattgtttgaatag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300456|gb|FG988843.1|FG988843
EST:     CCAAAACAGACGAATTTGTTATCCATAGCCCCACATTGACTTCCAGCAAA                         TGGTGGCCTGGTGGATTGGGTAAAATATCCACCCATGCTGTTGCTTATGCC
genomic: CCAAAACAGACGAATTTGTTATCCATAGCCCCACATTGACTTCCAGCAAAgtgagtgaaa ... atttaaacagTGGTGGCCTGGTGGATTGGGTAAAATATCCACCCATGCTGTTGCTTATGCC