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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCAAATTTTGCTCACAGAGTTCTCCGAAATGCAAGGACAACTTGAAGTTCTTTGTCAAGAGCGATCTAATTTGCTCGATACAATAAGGCAGTTAGAGgtaattaatttcttaccttgtgctttgttctggag

Basic information

species Glycine max
transcript GLYMA11G03420.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03420.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0154g00240.t01 (Vitis vinifera), 5'ss of exon 2
TGAGCAAATTTTGCTCACAGAGTTCTCCGAAATGCAAGGACAACTTGAAGTTCTTTGTCAAGAGCGATCTAATTTGCTCGATACAATAAGGCAGTTAGAGgtaattaatttcttacct-tgtgctttgttctggag----------------------------------------------------------------
 || || ||  ||||  | |||||||| ||||| ||||| ||| || ||||||||||| |||| ||||| ||||||||||||||| |||| ||| | ||||||| |     ||||  | |  |   ||    |                                                                   
CGAACAGATCATGCTTTCTGAGTTCTCGGAAATACAAGGCCAAGTTAAAGTTCTTTGTGAAGAACGATCCAATTTGCTCGATACATTAAGACAGCTGGAGgtaactttgcacttaattataagtaatgcctcgataatggagtgggtgaaacttctcttttctctttctctttttattccaatcttttagttgacagtca