1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAACCTGATGAAACTGATTTGAACATACACATACCTGCTGTCATGCTTCCATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTGgtgagcttccttgtgcatgttttgtggacttgtaatagtttctatttaatgcagctagctaagcgatagtcacaacatctttaatgcttatgacttatgagcagattctttaattgcaatgtaactactagttgtttgtttaaaggggaggggagagctttctaatttattttttttgccgttttgcag
species | Glycine max |
transcript | GLYMA11G02540.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTAGATGCAGGTACAAGGCTGGAAAAA-TGCTGACGACTACTTC--CTG TGTCTGTGCAGCTGTACTCACCATTTCGACCAGCTGTTGACATAGCAGAAGEST: gi|254341536|gb|GR852673.1|GR852673
genomic: ATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTGgtgagcttcc ... cgttttgcagTGTCTGTGCAGCTGTACTCACCATTTCGACCAGCTGTTGACATAGCAGAAG
EST: ATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTG TGTCTGTGCAGCTGTACTCACCATTTCGACCAGCTGTTGACATAGCAGAAGEST: gi|213597069|gb|DB968164.1|DB968164
genomic: ATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTGgtgagcttcc ... cgttttgcagTGTCTGTGCAGCTGTACTCACCATTTCGACCAGCTGTTGACATAGCAGAAG
EST: ATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTG TGTCTGTGCAGCTGTACTC
genomic: ATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTGgtgagcttcc ... cgttttgcagTGTCTGTGCAGCTGTACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCTGATGAAACTGATTTGAACATACACATACCTGCTGTCATGCTTCCATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTGgtgagcttccttgtgcatgttttgtggacttgtaatagtttctatttaatgcagctagctaagcgatagtcacaacatctttaatgcttatgacttatgagcagattctttaattgcaatgtaactactagttgtttgtttaaaggggaggggagagctttctaatttattttttttgccgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG