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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatttatactgtccatgcttggtcatatgctatcttattgaatatagcatacaataggatactgttcacttgtccgtgcttggtgatgtactat...

Basic information

species Glycine max
transcript GLYMA11G02340.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193352697|gb|FK315973.1|FK315973
EST:     CGTTACCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACAAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAAT
genomic: CGTT-CCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAAC-AACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAAT
EST: gi|193395648|gb|FK362215.1|FK362215
EST:     ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAA
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAA
EST: gi|207704051|gb|GD684977.1|GD684977
EST:     ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACAACTGCAGAGTTG
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAACAACTGCAGAGTTG
EST: gi|193388292|gb|FK356145.1|FK356145
EST:     ACGTTCCTGGCCAAGATGCTTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATC
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATC
EST: gi|193389480|gb|FK354365.1|FK354365
EST:     ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAAT
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCC-AACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAAT
EST: gi|208155141|gb|GD956292.1|GD956292
EST:     ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATC
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATC
EST: gi|193519229|gb|FK474994.1|FK474994
EST:     ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATC
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATC
EST: gi|208321460|gb|GE119541.1|GE119541
EST:     ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATC
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATC
EST: gi|192329164|gb|FK021459.1|FK021459
EST:     ACGTTCCTGGCCA-GATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACAACTGCAGAGT
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAACAACTGCAGAGT
EST: gi|193390519|gb|FK356439.1|FK356439
EST:     ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACCAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAAT
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAA-CAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAAT
EST: gi|193592990|gb|FK548826.1|FK548826
EST:     ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACAA
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAACAA
EST: gi|193417493|gb|FK382919.1|FK382919
EST:     TTGTTTGGGAAG                         ATCTATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAGT
genomic: TTGTTTGGGAAGgtaactgatt ... agcaaaacagATC-ATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAAT
EST: gi|208242623|gb|GE041467.1|GE041467
EST:     ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATC
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATC
EST: gi|193320943|gb|FK287696.1|FK287696
EST:     ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAG                         ATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAAACCAAAATTGAAAT
genomic: ACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatt ... agcaaaacagATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAA-CCAAAATTGAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGgtaactgatttatactgtccatgcttggtcatatgctatcttattgaatatagcatacaataggatactgttcacttgtccgtgcttggtgatgtactat

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