Sequence
atgc intronic sequence ATGC exonic sequenceGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGgtgaatagaataatgtatctttttctggtcttatatatgccaattgtcaacataatcctggccatcaactttaatgtcattttttaaagcatttggttgt...
Basic information
species | Glycine max |
transcript | GLYMA11G01940.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os09g15420.1 (Oryza sativa), 5'ss of exon 7
GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGgtgaatagaataatgtatctttttctggtcttatatatgccaattgtcaacataatcctggccatcaactttaatgtcattttttaaagcatttggttgt-----
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GATGTCAAGCATACAACCTTGGAACAGGAAAGGGAACATCAGTGTTGGAAATAGTTAATGCATTTGAGAAAGTTTCTGGAAAGgtatgcctgatttgatatatttggacaagtgtacatgtttc--ttgcc--tgtccttttgacatgttatgttg-tgctggttaccaaatttcctactcaattctt
upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 7
lower sequence: AT1G64440.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGgtgaatagaataatg-tatctttttctggtcttatatat-gcca-attgtcaa---cataatcctggccatcaactttaatgtc-attttttaaagcat------ttggttgt------------------
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GTTGTGAGGTATACAACCTGGGAACCGGAAAAGGAACAACAGTGTTGGAGATGGTTGATGCATTTGAGAAAGCTTCTGGAATGgtaagaagatcacttctctccttctctctctctctctctcgctatacactcaaattcataagagtgtacgcacacatatgtgttgactctttacatcacaatgacttgatagtttgcaataatgtgtacag
upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 5'ss of exon 7
GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGgtgaatagaataatgtatctttttctggtcttatatatgccaattgtcaacataatcctggccatcaactttaatgtcattttttaaagcatttggttgt--
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GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGATGGTTGCAGCATTTGAGAAGGCATCTGGAAAGgtg--ttgaacagtttaacatttcctactttaattcctctcttctggttttccaactcccaaagaaaagattgaacctttttctaagaactttttatttcta
upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g01560.t01 (Vitis vinifera), 5'ss of exon 7
GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGgtgaatagaataatgtatctttttctggtcttatatatgccaattgtcaacataatcctggccatc---aactttaatgtcattttttaaagcatttggttgt
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GGTGTGAAGTGTACAACTTGGGAACTGGGAAAGGAACTTCAGTTTTGGAGATGGTTGCAGCATTTGAGAAGGCATCTGGAAAGgt-atcatatttgaatgtctgttttggttccccagattactgaatgtatctgcatttgtcattattcaaaactttgttttcttcgtttgaa-caattacttg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9902956|gb|BE611924.1|BE611924EST: GAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAG AAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTG
genomic: GAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGgtgaatagaa ... atttgtgtagAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGgtgaatagaataatgtatctttttctggtcttatatatgccaattgtcaacataatcctggccatcaactttaatgtcattttttaaagcatttggttgt
- - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG