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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACAACAACATCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGTTTAAGTCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaatttctcatattgacattgttgagatcctacatcaactctgataggggccatatgtccagtgcaattcttataaggcttgggcaatctttac...

Basic information

species Glycine max
transcript GLYMA11G01780.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403084|gb|EV272894.1|EV272894
EST:     TTTAAGTCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTG                         GGGCAAGGATGTTGTATAATCCACATGATGTCTTATTGAGAAGAAAAATTG
genomic: TTTAAGTCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaat ... ttttatgcagGGGCAAGGATGTTGTATAATCCACATGATGTCTTATTGAGAAGAAAAATTG
EST: gi|19452768|gb|BM954178.1|BM954178
EST:     TTTAAGTCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTG                         GGGCAAGGATGTTGTATAATCCACATGATGTCTTATTGAGAAGAAAAATTG
genomic: TTTAAGTCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaat ... ttttatgcagGGGCAAGGATGTTGTATAATCCACATGATGTCTTATTGAGAAGAAAAATTG
EST: gi|6727132|gb|AW311486.1|AW311486
EST:     TTTAAGTCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTG                         GGGCAAGGATGTTGTATAATCCACATGATGTCTTATTGAGAAGAAAAATTG
genomic: TTTAAGTCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaat ... ttttatgcagGGGCAAGGATGTTGTATAATCCACATGATGTCTTATTGAGAAGAAAAATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACAACAACATCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGTTTAAGTCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaatttctcatattgacattgttgagatcctacatcaactctgataggggccatatgtccagtgcaattcttataaggcttgggcaatctttac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC