1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTTCAGTATAAAAATGTTATTTTCACAGTTTGGGATGTTGGAGGACAAGAGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTGgtgagaattagttttcatgccttttatctcggtgaaagaaaagttatgctgagcttgttgtttttcgaaaagttccttctttctccatatcattaatcagtccagtaggctggaaagaaaggtctacaggcacaaggtagcaaggttgatatatttgttgatgtgtgcatttatgcag
species | Glycine max |
transcript | GLYMA11G01380.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTG ATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCATEST: gi|298199192|gb|HO042555.1|HO042555
genomic: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTGgtgagaatta ... atttatgcagATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAG
EST: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTG ATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGEST: gi|298170232|gb|HO018856.1|HO018856
genomic: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTGgtgagaatta ... atttatgcagATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAG
EST: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTG ATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGEST: gi|298188565|gb|HO035258.1|HO035258
genomic: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTGgtgagaatta ... atttatgcagATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAG
EST: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTG ATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGEST: gi|298172316|gb|HO019356.1|HO019356
genomic: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTGgtgagaatta ... atttatgcagATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAG
EST: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTG ATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGEST: gi|298185092|gb|HO030305.1|HO030305
genomic: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTGgtgagaatta ... atttatgcagATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAG
EST: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTG ATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAGEST: gi|192296463|gb|FG989828.1|FG989828
genomic: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTGgtgagaatta ... atttatgcagATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAG
EST: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTG ATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAG
genomic: AGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTGgtgagaatta ... atttatgcagATTTATGTTGTTGATAGCTTGGATCGTGAGAGAATAGGTAAAGCAAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTCAGTATAAAAATGTTATTTTCACAGTTTGGGATGTTGGAGGACAAGAGAAACTAAGGCCACTTTGGAGGCACTATTTTAACAACACAGATGGCCTGgtgagaattagttttcatgccttttatctcggtgaaagaaaagttatgctgagcttgttgtttttcgaaaagttccttctttctccatatcattaatcagtccagtaggctggaaagaaaggtctacaggcacaaggtagcaaggttgatatatttgttgatgtgtgcatttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG