1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTGTCAGAGATAAACGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagttcggatgggcttctcttttaagcattactctgtagtgtctaagtacatttagtcttgtgactagtgctttgattcagtatagatatttta...
species | Glycine max |
transcript | GLYMA11G01300.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATG GAAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGGEST: gi|208153822|gb|GD954791.1|GD954791
genomic: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagt ... ttggtttcagGAAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGG
EST: GTTAAAGAAATGAATG GAAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTAGAAGGEST: gi|208290546|gb|GE087608.1|GE087608
genomic: GTTAAAGAAATGAATGgttagtaagt ... ttggtttcagGAAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGG
EST: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATG GAAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGGEST: gi|193432436|gb|FK396474.1|FK396474
genomic: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagt ... ttggtttcagGAAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGG
EST: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATG GAAAGTATGTTGGAAATCGGCCGATAAAACTACGEST: gi|6725839|gb|AW310238.1|AW310238
genomic: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagt ... ttggtttcagGAAAGTATGTTGGAAATCGGCCGATAAAACTACG
EST: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATG GAAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGGEST: gi|207740117|gb|GD714727.1|GD714727
genomic: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagt ... ttggtttcagGAAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGG
EST: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATG GGAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGGEST: gi|193531570|gb|FK493168.1|FK493168
genomic: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagt ... ttggtttcagGAAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGG
EST: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAA-TGAATG GAAAGTNTGTTGGAAATCGGCCGATAAAACTACGEST: gi|193573450|gb|FK530145.1|FK530145
genomic: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagt ... ttggtttcagGAAAGTATGTTGGAAATCGGCCGATAAAACTACG
EST: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATG GAAAGTATGTTGGAAATCGGEST: gi|6566353|gb|AW234022.1|AW234022
genomic: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagt ... ttggtttcagGAAAGTATGTTGGAAATCGG
EST: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATG GAAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGGEST: gi|193331635|gb|FK295447.1|FK295447
genomic: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagt ... ttggtttcagGAAAGTATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGG
EST: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATG GAAAGTATGTTGGAAATCGGCCGATAAAACEST: gi|193427544|gb|FK393542.1|FK393542
genomic: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagt ... ttggtttcagGAAAGTATGTTGGAAATCGGCCGATAAAAC
EST: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATG GAAAGTATGTTGGAAATCGGCCGATAAAACTACG
genomic: GAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagt ... ttggtttcagGAAAGTATGTTGGAAATCGGCCGATAAAACTACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTCAGAGATAAACGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagttcggatgggcttctcttttaagcattactctgtagtgtctaagtacatttagtcttgtgactagtgctttgattcagtatagatatttta
- - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA