1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCCCCTTTTTCTGTAGCGATAGAGAATATATCATTGCTCGAAGAATATGGCAGGCTGGAAACACATACTATTGTGTAACGAAGgtatggttctaacatgatttgctataattttatggcatttcctcttgtttctgctcctctctcaatgactagtccccactcttctattgctagaaaagaa...
species | Glycine max |
transcript | GLYMA11G01030.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGCTCGAAGAATATGGCAGGCTGGAAACACATACTATTGTGTAACGAAG GGAGTACCCTATCCAAGTTTGCCAAAACGGGATAAGCCCAGACGTGTGGAGEST: gi|18733736|gb|BM527782.1|BM527782
genomic: TTGCTCGAAGAATATGGCAGGCTGGAAACACATACTATTGTGTAACGAAGgtatggttct ... aatgttgtagGGAGTACCCTATCCAAGTTTGCCAAAACGGGATAAGCCCAGACGTGTGGAG
EST: TTGCTCGAAGAATATGGCAGGCTGGAAACACATACTATTGTGTAACGAAG GGAGTACCCTATCCAAGTTTGCCAAAACGGGATAAGCCCAGACGTGTGGAGEST: gi|192297133|gb|FG988229.1|FG988229
genomic: TTGCTCGAAGAATATGGCAGGCTGGAAACACATACTATTGTGTAACGAAGgtatggttct ... aatgttgtagGGAGTACCCTATCCAAGTTTGCCAAAACGGGATAAGCCCAGACGTGTGGAG
EST: TTGCTCGAAGAATATGGCAGGCTGGAAACACATACTATTGTGTAACGAAG GGAGTACCCTATCCAAGTTTGCCAAAACGGGATAAGCCCAGACGTGTGGAG
genomic: TTGCTCGAAGAATATGGCAGGCTGGAAACACATACTATTGTGTAACGAAGgtatggttct ... aatgttgtagGGAGTACCCTATCCAAGTTTGCCAAAACGGGATAAGCCCAGACGTGTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCCCTTTTTCTGTAGCGATAGAGAATATATCATTGCTCGAAGAATATGGCAGGCTGGAAACACATACTATTGTGTAACGAAGgtatggttctaacatgatttgctataattttatggcatttcctcttgtttctgctcctctctcaatgactagtccccactcttctattgctagaaaagaa
- - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccactc