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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactctatgctcttgtgataggtagtcatctggagttccaattctaaacagaatctttccag

Basic information

species Glycine max
transcript GLYMA11G00370.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 5'ss of exon 4
ATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactctatgc--tcttgtgataggtagtcatctggagtt--------ccaattctaaac-agaatctttccag
||||| || |||||  |||| |||||||| |||||||||||||||||||| || ||||| ||||| ||||||  ||  ||||     |||  ||  |||     | ||||  ||        | |||| ||| |  |||   |  |||
ATTGGGAAAGGATCAAGAGGAGATGTTACTATATTGCCTACTCTTGTTGTGAACAATCGGCAATACCGAGgtaggtgttctacaaaatctgttgtaaggcttaaacctggcatttgctctggctaattttaacctggaaaactaacag

upper sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 4
lower sequence: AC211785.2_FGT003 (Zea mays), 5'ss of exon 2
ATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactctatgctcttgtgataggtagtcatctggagttccaattctaaacagaatctttccag
||||| || || ||  |||| |||||||| ||||||||||| |||||||| || || || ||||||||||||   || |||           |       ||  ||  | |  |  |      || ||    | |||
ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattctgcaggtacacaaacttacatccacttaaatgactttaacctgcaaaaggaatacag

upper sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 4
ATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactctat-gctcttgtgataggtagtcatctggagttccaattctaaacagaatctttccag
||||| || || ||  |||| |||||||| ||||||||||| |||||||| || || || ||||||||||||   || |||   | |      |     |  ||       |  |  |      || ||    | |||
ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattctgcaggtacacaaacttacatccactctatatgactttaacctgcaaaaggaatacag

upper sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G328265_T01 (Zea mays), 5'ss of exon 5
ATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactctat-gctcttgtgataggtagtcatctggagttccaattctaaacagaatctttccag
||||| || || ||  || | |||||||| ||||||||||| |||||||| || || || ||||||||||||   || ||| | | |      |     |  ||  |    |  |  |      || ||    | |||
ATTGGGAAAGGTTCAAGAAGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattctgtaggtacacaaacttacatccactttatatgactttaacctgcaaaaggaatacag

upper sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G14720.2 (Arabidopsis thaliana), 5'ss of exon 5
ATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactcta-tgctct-tgtgataggtagtcatctggagttccaattctaaacagaatctttccag-----
 |||| |||||  |  | |||||||||||||||||||||||  | |||||||| ||  |||| || |||||||||| |   | || ||    ||| |  |    || || ||||  |  |      | |||| |||||      
GTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAGgtttgttccgcagtgttcaacttgagacttcaatatatgtagttt-agcttattttataatcgttccattgcag

upper sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G14740.2 (Arabidopsis thaliana), 5'ss of exon 4
ATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactctat-gctcttgtgataggtagtcatctggagtt--ccaattctaaacagaatctttccag---
 |||| ||||| ||  | |||||||||||||||||||||||  | |||||||| ||  |||| || ||||||||||  |  || | |    | | |  |    |  || ||||  ||  |  |||| | |   || |  |   
GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCAACAACAGACAGTACCGAGgtttgtcttacatagttaacttaagacttcaatacttgtagtttacctttgttaaataaatgtttccttgcag

upper sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 4
ATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactctatgctcttgtgataggtagtcatctggag--ttccaattctaaacagaatctttccag
 |||| || ||| |  |||| ||||| || |||||||| || |||||||| || ||| |||||||||||||||||| ||   || |  |||       | |  || |||   ||||  | |||||     |  || |||
GTTGGGAAAGGAACAAGAGGCGATGTCACTATATTGCCCACCCTTGTTGTGAACAATAGACAATATCGAGgtttgt-cttagtgttaatgtttcttaaaat-gtcaggatgtttcccttcctaaaacatgtagttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|48574969|gb|CO036168.1|CO036168
EST:     TGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAG                         GAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGG
genomic: TGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactc ... atctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGG
EST: gi|208200101|gb|GD996030.1|GD996030
EST:     TGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAG                         GAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGG
genomic: TGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactc ... atctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGG