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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACTGTTTATATGTTTTCATTGATCGGAGCATTTCTGAGTGATTCATACTGGGGTCGATACTTAACCTGCACGGTCTTTCAACTTGTTTTCGTTCTGgtacttcactttaccaatattagtcttttgtattgattgttcaacttttctcccttttcctgacagttgaattgaattgtttaatag

Basic information

species Glycine max
transcript GLYMA10G44320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44320.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g01300.t01 (Vitis vinifera), 5'ss of exon 2
AGGAACTGTTTATATGTTTTCATTGATCGGAGCATTTCTGAGTGATTCATACTGGGGTCGATACTTAACCTGCACGGTCTTTCAACTTGTTTTCGTTCTGgtacttcactttaccaatattagt-cttttgtattgattgttcaacttttctccctt----ttcctgaca-gt-tgaattgaattgtttaatag-------
 |||||||| ||| | |  |||||||| ||||||||||| |||||||| ||||||||||||||||| || ||  |  |||||||| |  | || || |||||| |  |  | | ||  |  | | |||||  |   ||  |   | || | |    |     |  ||| | || ||     |||| ||  || |       
TGGAACTGTATATTTATGCTCATTGATTGGAGCATTTCTCAGTGATTCCTACTGGGGTCGATACTTGACTTGTGCCATCTTTCAAGTCATCTTAGTGCTGgtaatatatatgatcatcaccatttctttttcaacaatgatctgaattgttttgagtaatactattgatatgtgtgggaataatttttgcatggtgattag