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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATATCTTGCGCCATGGGGAGCCACCCACATGAAAGAATTGCAGCGAGTCATTGCAACACTAGCTTTTAAAAGGGATACTGAATGTGCCACATACAAGgtgagcactccttgtgtttgagtgtttttttgcgttaattttattatctttttaatgcaatagtgttaggattgtattcatattctttgttgttagaatt...

Basic information

species Glycine max
transcript GLYMA10G43910.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43910.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g03560.t01 (Vitis vinifera), 5'ss of exon 4
GAAATATCTTGCGCCATGGGGAGCCACCCACATGAAAGAATTGCAGCGAGTCATTGCAACACTAGCTTTTAAAAGGGATACTGAATGTGCCACATACAAGgtgagcactccttgtgtttgagtgtttttttgcgttaattttattatcttt--ttaatgcaatagtgttaggattgtattcatattctttgttgttagaatt-
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GAAGCACCTTGCACCATGGGGAGCTACCAATATGAAAGAATTGCAGCGGGTCATGGCAACACTGGCTTTTAAGAGCAATACTGAATGTGCAACATACAAGgtaaac---tcatgtatctttgtcttattatatttctagtacttgattgtagatggacatacttgttcatgatatttggtaaaagaacaggtttccagtacta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208116916|gb|GD916262.1|GD916262
EST:     TCATTGCAACACTAGCTTTTAAAAGGGATACTGAATGTGCCACATACAAG                         GTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG
genomic: TCATTGCAACACTAGCTTTTAAAAGGGATACTGAATGTGCCACATACAAGgtgagcactc ... tattttacagGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG
EST: gi|192319196|gb|FK006924.1|FK006924
EST:     CATTGCAACACTAGCTTTTAAAAGGGGATACTGAATGTGCCACATACAAG                         GTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG
genomic: CATTGCAACACTAGCTTTTAAAAGGG-ATACTGAATGTGCCACATACAAGgtgagcactc ... tattttacagGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG
EST: gi|192319197|gb|FK006925.1|FK006925
EST:     TCATTGCAACACTAGCTTTTAAAAGGGATACTGAATGTGCCACATACAAG                         GTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG
genomic: TCATTGCAACACTAGCTTTTAAAAGGGATACTGAATGTGCCACATACAAGgtgagcactc ... tattttacagGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG