1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagactattccatgtataatcttcttctgtacttgcctcttgtctttgagttgatggcttgaagatttatgtgcttattttttaggcataaccaaa...
species | Glycine max |
transcript | GLYMA10G42940.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|16346337|gb|BI971932.1|BI971932
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|120533316|gb|EH261449.1|EH261449
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|120533616|gb|EH261749.1|EH261749
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|213596831|gb|DB964094.1|DB964094
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|120533188|gb|EH261321.1|EH261321
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|120533627|gb|EH261760.1|EH261760
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|120533687|gb|EH261820.1|EH261820
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|213591852|gb|DB973417.1|DB973417
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|209727398|gb|BW669851.1|BW669851
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|208145241|gb|GD941760.1|GD941760
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: GAAAAGGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCGATTTEST: gi|13478635|gb|BG508033.1|BG508033
genomic: GAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|120532915|gb|EH261048.1|EH261048
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|209697688|gb|BW655589.1|BW655589
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|120533425|gb|EH261558.1|EH261558
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|213595962|gb|DB955998.1|DB955998
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagactattccatgtataatcttcttctgtacttgcctcttgtctttgagttgatggcttgaagatttatgtgcttattttttaggcataaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT