1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CACCGTGTCCATGGGGAACCGGCACGTTGAGAACTGGGCAGAAGATAGCCAACACACTGAAGATACTTGCACAGATATAGACACCGATGATAAAAACCAAgtgggtctctatagaattcttggcatattgttgatttggaaagtttttattacaaaggctaaaatacactttttcggttactcattttgtttttttgttt...
species | Glycine max |
transcript | GLYMA10G42280.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AACACACTGAAGATACTTGCACAGATATAGACACCGATGATAAAAACCAA TGTTTCTCAACTGTGTCTTGGTGCAATGGAGTTGGGGACGGGGCACTTEST: gi|24136574|gb|BU927084.1|BU927084
genomic: AACACACTGAAGATACTTGCACAGATATAGACACCGATGATAAAAACCAAgtgggtctct ... tgtttgacagTGTTTCTCAACTGTGTCTTGGTGCAATGGAGTTGGGGACGGGGCACTT
EST: AACACACTGAAGATACTTGCACAGATATAGACACCGATGATAAAAACCAA TGTTTCTCAACTGTGTCTTGGTGCAATGGAGTEST: gi|298165985|gb|HO008956.1|HO008956
genomic: AACACACTGAAGATACTTGCACAGATATAGACACCGATGATAAAAACCAAgtgggtctct ... tgtttgacagTGTTTCTCAACTGTGTCTTGGTGCAATGGAGT
EST: AACACACTGAAGATACTTGCACAGATATAGACACCGATGATAAAA-CCAA TGTTTCTCAACTGTGTCTTGGTGCAATGGAGTTGGGGACGGGGCACTTGTA
genomic: AACACACTGAAGATACTTGCACAGATATAGACACCGATGATAAAAACCAAgtgggtctct ... tgtttgacagTGTTTCTCAACTGTGTCTTGGTGCAATGGAGTTGGGGACGGGGCACTTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCGTGTCCATGGGGAACCGGCACGTTGAGAACTGGGCAGAAGATAGCCAACACACTGAAGATACTTGCACAGATATAGACACCGATGATAAAAACCAAgtgggtctctatagaattcttggcatattgttgatttggaaagtttttattacaaaggctaaaatacactttttcggttactcattttgtttttttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA