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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGAATTATGGTTTCTCAAACCGAGGCAATCTTTGCATCTACTTCTTCAGATGGCACTGCTTGTGTATGGGAACTTGTATTTCCAACGACTGGTAGCGgtaagccataattcccaatggcaatgaccccgcttagtaccatgttagtaattttatagtctacattgattgagacttgcttcatcatttttag

Basic information

species Glycine max
transcript GLYMA10G41620.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41620.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g04130.t01 (Vitis vinifera), 5'ss of exon 4
AGTGGAATTATGGTTTCTCAAACCGAGGCAATCTTTGCATCTACTTCTTCAGATGGCACTGCTTGTGTATGGGAACTTGTATTTCCAACGACTGGTAGCGgtaagccataa--ttcccaatggcaatgaccccgcttagtaccatgt-tagtaattttatagtctac-attgattgagacttgcttcatcattt--ttag
| |||||||||||||||| |||| || |  || ||||||||||| ||||||||||| ||      ||| ||||||||  |  ||||| | |||  | | ||| || ||  |  ||     ||    |        ||  ||  || | |  |  || |||||       ||  | || |||  |   | ||| |  ||  
ACTGGAATTATGGTTTCTGAAACTGATGTGATATTTGCATCTACCTCTTCAGATGGAACAATAAATGTGTGGGAACTGATCCTTCCATCCACTATTGGAGgtgagtcagcagtttttttttgtttttttatttattttataatatctgttttttttctataggtagttgtttttggatactatcaaaaccatgtgattgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193478859|gb|FK447984.1|FK447984
EST:     TGGGAACTTGTATTTCCAACGACTGGTAGCG                         GTGACTGTAAATTATCGTGCCTGGATTCTTTCTCTGTTGGTTCCAAATCTA
genomic: TGGGAACTTGTATTTCCAACGACTGGTAGCGgtaagccata ... tcatttttagGTGACTGTAAATTATCGTGCCTGGATTCTTTCTCTGTTGGTTCCAAATCTA
EST: gi|208162165|gb|GD965276.1|GD965276
EST:     AGATGGCACTGCTTGTGTATGGGAACTTGTATTTCCAACGACTGGTAGCG                         GTGACTGTAAATTATCGTGCCTGGATTCTTTCTCTGTTGGTTCCAAATCTA
genomic: AGATGGCACTGCTTGTGTATGGGAACTTGTATTTCCAACGACTGGTAGCGgtaagccata ... tcatttttagGTGACTGTAAATTATCGTGCCTGGATTCTTTCTCTGTTGGTTCCAAATCTA