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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCGCTAGAGAGGAGGATTCCTTAAATATTCTGCTGGAGTTTGTTCCTGGTGGATCTATCTCATCGCTCTTGGGGAAATTTGGATCCTTCCCTGAATCCgtaagtggttgtttcgtttatttaattatttctttatgaagcacatagagactttaacgtgttctgattcttttgttgctcaatgttcatttttatcag

Basic information

species Glycine max
transcript GLYMA10G39670.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39670.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G06030.1 (Arabidopsis thaliana), 5'ss of exon 4
AACCGCTAGAGAGGAGGATTCCTTAAATATTCTGCTGGAGTTTGTTCCTGGTGGATCTATCTCATCGCTCTTGGGGAAATTTGGATCCTTCCCTGAATCCgtaagtggttgtttcgtttatttaattatttctttatgaagcacatagagactttaacgtgttctgattcttttgttgctcaatgttcatttttatcag
 || |  ||||||   ||||| || |||||| || |||||||||||||||||||||| || |||||  | |||| ||| |||||||| || |||||  | ||||||  |   | |    |  | |   || ||  ||   | |  |   ||  ||  |  |   ||| | || |||   | ||  |   |||| |  ||
TACTGTAAGAGAGAGTGATTCGTTGAATATTTTGATGGAGTTTGTTCCTGGTGGATCAATATCATCTTTGTTGGAGAAGTTTGGATCTTTTCCTGAGCCTgtaagtcctgactac----acctgaactttgctaaatcttgtattt---gagcttcgctggcgatgaatgttgtgtc-tttaactt---ttttaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208095486|gb|GD897088.1|GD897088
EST:     GTGGATCTATCTCATCGCTCTTGGGGAAATTTGGATCCTTCCCTGAATCC                         GTTATAAAAATGTATACAAAACAGCTTTTTACTTGGGCCTTGAAATAATCT
genomic: GTGGATCTATCTCATCGCTCTTGGGGAAATTTGGATCCTTCCCTGAATCCgtaagtggtt ... tttttatcagGTTATAAAAATGTATACAAAACAGCTTTT-ACT-GGGCCTTGAA-TA-TCT