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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGAATTGCTCAGGCATAAGACTATAAACAAAGTTGTAATGTGTGACATAGATGAGgtaaaatctcctttgtataaagttaactcttcattgtctatttatataccatggagctcattgacgagttaaaaacttaaaaattaaaatccatgtgcttgctcgagcag

Basic information

species Glycine max
transcript GLYMA10G39440.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39440.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g03200.t01 (Vitis vinifera), 5'ss of exon 4
AAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGAATTGCTCAGGCATAAGACTATAAACAAAGTTGTAATGTGTGACATAGATGAGgtaaaatctcctttg----tataaagttaactcttcattgtctatttatataccatggagctcattgacgagttaaaaacttaaaaattaaaatccatgtgcttgctcgagcag
|||||   | || || ||||| ||||| ||||| || |||||||||||| | || || ||||||||| || | || ||||| ||||||||||| ||||||||||  ||   |||     | |  | || | || ||    |   ||| | | || |      |||||  || |    ||  ||     ||  ||  || |              
AAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGAAATACTGAGACATAAGACTGTAGAGAAGGTTGTCATGTGTGACATTGATGAGgtaacctccttttttgctctttttatttcaatcctcgactttcttttctct-ccttttcatgcattgctgattctttaagatattttctatcattaatttt-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331927|gb|FK026711.1|FK026711
EST:     TGCTCAGGCATAAGACTATAAACAAAGTTGTAATGTGTGACATAGATGAG                         GAGGTGGTGAATTTCTGCAAATCGTACTTAGTTGTGAACAAGGAAGCATTC
genomic: TGCTCAGGCATAAGACTATAAACAAAGTTGTAATGTGTGACATAGATGAGgtaaaatctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATCGTACTTAGTTGTGAACAAGGAAGCATTC
EST: gi|192295039|gb|FG986758.1|FG986758
EST:     GCTCAGGCATAAGACTATAAACAAAGTTGTAATGTGTGACATAGATGAG                         GAGGTGGTGAATTTCTGCAAATCGTACTTAGTTGTGAACAAGGAAGCATTC
genomic: GCTCAGGCATAAGACTATAAACAAAGTTGTAATGTGTGACATAGATGAGgtaaaatctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATCGTACTTAGTTGTGAACAAGGAAGCATTC
EST: gi|151411311|gb|EV281122.1|EV281122
EST:     TGCTCAGGCATAAGACTATAAACAAAGTTGTAATGTGTGACATAGATGAG                         GAGGTGGTGAATTTCTGCAAATCGTACTTAGTTGTGAACAAGGAAGCATTC
genomic: TGCTCAGGCATAAGACTATAAACAAAGTTGTAATGTGTGACATAGATGAGgtaaaatctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATCGTACTTAGTTGTGAACAAGGAAGCATTC
EST: gi|298183097|gb|HO028360.1|HO028360
EST:     TAAACAAAGTTGTAATGTGTGACATAGATGAG                         GAGGTGGTGAATTTCTGCAAATCGTACTTAGTTGTGAACAAGGAAGCATTC
genomic: TAAACAAAGTTGTAATGTGTGACATAGATGAGgtaaaatctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATCGTACTTAGTTGTGAACAAGGAAGCATTC