Sequence
atgc intronic sequence ATGC exonic sequenceAGCTTCAGCGGTGAACTTGTCCCTGAAGAAAATTTCTTGGGTATATGCAGTAGAGAATTATTAGCCAGAGGTTGTGAACTCCTCAAACGCACACGCAAAGgtgtatatgatttaccttcctatgttattatgtttgtcttggagagaaagaagttgtagttattttttgcttggcttagtatatttttaggattatggggtttagtcaatggaaagggattttatctgatgagagaattgtgtgcag
Basic information
species | Glycine max |
transcript | GLYMA10G38990.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G38990.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G14740.3 (Arabidopsis thaliana), 5'ss of exon 2
AGCTTCAGCGGTGAACTTGTCCCTGAAGAAAATTTCTTGGGTATATGCAGTAGAGAATTATTAGCCAGAGGTTGTGAACTCCTCAAACGCACACGCAAAGgtgtatatgatttaccttcctatgttattatgtttgtcttggagagaaagaagttgtagttattttttgcttggcttagtatatttttaggattatggggtttagtcaatggaaagggattttatctgatgagagaattgtgtgcag
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AGTCACAGTGGTGAACTTGTACAACAGGAGAATTTCTTGGGAACTTGTAGTAGAGAATGGCTCGCTAGAGGTTGTGAACTCCTCAAACGCACTCGCAAAGgtaagaaaaattcaaacttgtgtatttaaaagtttaaattttag---------ttgttga-atcttttgtctaatgatgtgtgacttttgcag------------------------------------------------------
upper sequence: GLYMA10G38990.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g04020.t01 (Vitis vinifera), 5'ss of exon 4
AGCTTCAGCGGTGAACTTGTCCCTGAAGAAAATTTCTTGGGTATATGCAGTAGAGAATTATTAGCCAGAGGTTGTGAACTCCTCAAACGCACACGCAAAGgtgtatatgatttaccttcctatgttattatgtttgtcttggagagaaagaagttgtagttattttttgcttggcttagtat-atttttaggattatggggtttagtcaatggaaagggattttatctgatgagagaattgtgtgcag
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AGTTACAGTGGTGAGCTCGTTGCTGAAGAAAACTTCCTAGGAATCTGCAGCAGAGAATTACTTGCTAGAGGCTGTGAACTTCTCAAACGCACCCGAAAAGgtata--------atcattttatctaattctgaattacttgtataattccctctcacaatcataattctcatacatgtgtgttatggttaataatgcag-------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51335275|gb|CO979141.1|CO979141EST: TAGAGAATTATTAGCCAGAGGTTGTGAACTCCTCAAACGCACACGCAAAG GTGATCTTCATTGGAAGGTTGTATCTGTGTATGTAAACAGGATGAATCAG
genomic: TAGAGAATTATTAGCCAGAGGTTGTGAACTCCTCAAACGCACACGCAAAGgtgtatatga ... ttgtgtgcagGTGATCTTCATTGGAAGGTTGTATCTGTGTATGTAAACAGGATGAATCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTTCAGCGGTGAACTTGTCCCTGAAGAAAATTTCTTGGGTATATGCAGTAGAGAATTATTAGCCAGAGGTTGTGAACTCCTCAAACGCACACGCAAAGgtgtatatgatttaccttcctatgttattatgtttgtcttggagagaaagaagttgtagttattttttgcttggcttagtatatttttaggattatggggtttagtcaatggaaagggattttatctgatgagagaattgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG