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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTGTGCAACTAGTGGATCATTTGGGCAAATGACAATTTTCTATTGTGGTAAGGTGAATGTCTATGACAGAGTCTCGCCTGATAAGgttggtaatgatctatcctcttgcatcaatagctggccataatccaataagacttcaccttccaatgcaaccttatttggatttgcag

Basic information

species Glycine max
transcript GLYMA10G38970.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38970.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g04060.t01 (Vitis vinifera), 5'ss of exon 4
---AGGGTGTGCAACTAGTGGATCATTTGGGCAAATGACAATTTTCTATTGTGGTAAGGTGAATGTCTATGACAGAGTCTCGCCTGATAAGgttggtaatgatctatcctcttgcatcaatagctggccataa-tccaataagac-ttcaccttccaatgcaaccttatttggatttgcag
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AAGTCCAGGTGCAACAAATTGTTTGGTTGGGCAGATGACAATTTTCTACTGTGGAAAGGTGAATGTGTATGATGGAGTTCCAGATGATAAGgt-aacaa--agcttcctttttgcatggatgcctgaagataaatcctttggcatgttggccttccaatgcatctgaatatggatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12774128|gb|BG239055.1|BG239055
EST:     TTTTCTATTGTGGTAAGGTGAATGTCTATGACAGAGTCTCGCCTGATAAG                         GCACGAGCAATCATGCAGCTTGCAACGAGTCCAGTCCAGCTTACTCAGGAT
genomic: TTTTCTATTGTGGTAAGGTGAATGTCTATGACAGAGTCTCGCCTGATAAGgttggtaatg ... ggatttgcagGCACGAGCAATCATGCAGCTTGCAACGAGTCCAGTCCAGCTTACTCAGGAT