1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTATAAGGAGAGCACATGCTGTTCATCCTATTACTGCTTTGCAAATGGAGTATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTCTGCAGgtgtttaaatagaaatattaactctagtgcatatattgtcaataacacaattgtacatttgcacttgagttttaatttgatatattaactctcagttatgcttctaacttaaattatctacaaaacatctgaaagaaaattgttgctgtatatgtctaactatgaagcattttgtaattgtag
species | Glycine max |
transcript | GLYMA10G38900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTCTGCAG ACAACTTGGGATTGGAATAGTGGCATATAGTCCTCTTGGTCGTGGCTTTTTEST: gi|151407405|gb|EV277220.1|EV277220
genomic: TATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTCTGCAGgtgtttaaat ... gtaattgtagACAACTTGGGATTGGAATAGTGGCATATAGTCCTCTTGGTCGTGGCTTTTT
EST: TATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTCTGCAG ACAACTTGGGATTGGAATAGTGGCATATAGTCCTCTTGGTCGTGGCTTTTTEST: gi|58018266|gb|CX705008.1|CX705008
genomic: TATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTCTGCAGgtgtttaaat ... gtaattgtagACAACTTGGGATTGGAATAGTGGCATATAGTCCTCTTGGTCGTGGCTTTTT
EST: TATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTCTGCAG ACAACTTGGGATTGGAATAGTGGCATATAGTCCTCTTGGTCGTGGCTTTTTEST: gi|6846802|gb|AW349092.1|AW349092
genomic: TATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTCTGCAGgtgtttaaat ... gtaattgtagACAACTTGGGATTGGAATAGTGGCATATAGTCCTCTTGGTCGTGGCTTTTT
EST: TATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTNNGCAG ACAACTTGGGATTGGAATAGTGGCATATAGTCCTCTTGGTCGTGGCTTTTTEST: gi|4291783|gb|AI441811.1|AI441811
genomic: TATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTCTGCAGgtgtttaaat ... gtaattgtagACAACTTGGGATTGGAATAGTGGCATATAGTCCTCTTGGTCGTGGCTTTTT
EST: TATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTCTGCAG ACAACTTGGGATTGGAATAGTGGCATATAGTCCTCTTGGTCGTGGCTTTTT
genomic: TATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTCTGCAGgtgtttaaat ... gtaattgtagACAACTTGGGATTGGAATAGTGGCATATAGTCCTCTTGGTCGTGGCTTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATAAGGAGAGCACATGCTGTTCATCCTATTACTGCTTTGCAAATGGAGTATTCCTTATGGACTCGTGACATTGAAGAAGAAATAATTCCACTCTGCAGgtgtttaaatagaaatattaactctagtgcatatattgtcaataacacaattgtacatttgcacttgagttttaatttgatatattaactctcagttatgcttctaacttaaattatctacaaaacatctgaaagaaaattgttgctgtatatgtctaactatgaagcattttgtaattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG