1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTATAAAGAGAGCACATGCTGTTCATCCTATTTCTGCTTTGCAAATGGAATATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAGgtaatttaagtagaataactacctctactgttgatattgtcacttgttacagttatactggagtttgatattcttgtctaagatgttttctaactcttttagacatgcatttaaatagattgattatctgcaaaatatctgaatgaaattattaattgtctagcatagaacatgtgcttgcag
species | Glycine max |
transcript | GLYMA10G38890.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAG G-AACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATEST: gi|9898893|gb|BE607861.1|BE607861
genomic: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAGgtaatttaag ... gtgcttgcagGGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCAT
EST: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAG GGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGGCTEST: gi|22525129|gb|BU083940.1|BU083940
genomic: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAGgtaatttaag ... gtgcttgcagGGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGGCT
EST: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAG GGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGGCTTTTTEST: gi|192323154|gb|FK017035.1|FK017035
genomic: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAGgtaatttaag ... gtgcttgcagGGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGGCTTTTT
EST: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAG GGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGGCTTTTTEST: gi|7232344|gb|AW567701.1|AW567701
genomic: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAGgtaatttaag ... gtgcttgcagGGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGGCTTTTT
EST: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAG GGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGGCTTTTTEST: gi|9899162|gb|BE608189.1|BE608189
genomic: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAGgtaatttaag ... gtgcttgcagGGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGGCTTTTT
EST: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAG GGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGG
genomic: TATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAGgtaatttaag ... gtgcttgcagGGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATAAAGAGAGCACATGCTGTTCATCCTATTTCTGCTTTGCAAATGGAATATTCTTTATGGACCCGTGACATTGAAGAAGAGATTATTCCACTATGCAGgtaatttaagtagaataactacctctactgttgatattgtcacttgttacagttatactggagtttgatattcttgtctaagatgttttctaactcttttagacatgcatttaaatagattgattatctgcaaaatatctgaatgaaattattaattgtctagcatagaacatgtgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA