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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGCCCAAAATCGATACTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttttcttcaaattaggtattatggaatactattctatctggcactgagtaatttcaattagggtaaaggattaaaaatttaggctagggatac...

Basic information

species Glycine max
transcript GLYMA10G38750.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38750.2 (Glycine max), 5'ss of exon 4
lower sequence: AT5G19910.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTTGGCCCAAAATCGATACTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagcc----ttttcttcaaattaggtattatggaatactattctatctggcactgagtaatttcaattagggtaaaggattaaaaatttaggctagggatac
|  |||| || ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||| ||||| || || || || || || || ||||||||||      | |  |    | | ||| |  |    ||   |  | |   |   ||  |||| |   || || |      |   |  ||   | ||  |    
ACCTGGCACAGAATCGGTATTTTGAAGATGAAGCATTTATTGGATACTTGAAGTATCTTCAATACTGGCAGCGACCAGAGTACATCAAGTTCATTATgtaagttggaatatcttatggaattggtgtagtcttgtagagtcttgtgaaggtttggataatatatctttggtt------tcctatgttcttgttacag----

upper sequence: GLYMA10G38750.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0039g02760.t01 (Vitis vinifera), 5'ss of exon 4
ATTTGGCCCAAAATCGATACTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttttcttcaaattaggtattatggaatactattctatctggcactgagtaatttcaattagggtaaaggattaaaaatttaggctagggatac----------------------------------------------------------------------------------
||||||| |||||||| || ||||| |||||||| |||||||| ||||| || || ||||||||||||||||  || || || || ||||| || ||||||||   |   | | | |     | ||  |||| | || |  |         || ||  ||     || |      |     |     ||     |||                                                                                  
ATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAATgtaagcaactctcttagagtcatgctcatctaataatgttatgcccatgttaaggtcatagcagcctaggaatcattgttctcctaccttctcttcttaccaaagcgtgtaacctttctgtgctttattttttatttttcattttcaagaatttgtattctcatggtgtggaatgattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997056|gb|CF808645.1|CF808645
EST:     TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT                         GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
genomic: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttt ... tgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
EST: gi|31475667|gb|CD417695.1|CD417695
EST:     TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT                         GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
genomic: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttt ... tgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
EST: gi|192330115|gb|FK019770.1|FK019770
EST:     TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT                         GTATCCTCATTGCTTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
genomic: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttt ... tgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG