Sequence
atgc intronic sequence ATGC exonic sequenceAAGGGAAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGATGAAGCCGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttttttccttttattttcaatgcatgggcatcaagtgctgccaagtctcaatttttgtatcaattatgttaagctcattgtgaatttgtgata...
Basic information
species | Glycine max |
transcript | GLYMA10G38680.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G38680.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G149520_T02 (Zea mays), 5'ss of exon 4
AAGGGAAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGATGAAGCCGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtat-cttttttttccttttattttcaatgcatgggcatcaagtgctgccaagtctcaatttttgtatcaattatgttaagctcattgtgaatttgtgata
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AAAGGAACTCTCAATTTGAAATGCTTGAAATTCCGTGTCCTTGATGAAGCTGATGAGATGCTAAACATGGGTTTTGTTGATGATGTCGAGCTCATTCTTGgtatgctcatttgtcagtttctatgtattgtacattcttatacaaatttcttttttgacaatatagattagtatgcaggagccaattattatctttatac-
upper sequence: GLYMA10G38680.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G62190.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGGGAAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGATGAAGCCGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttttttccttttattttcaatgcatgggcatcaagtgctgccaagtctcaatttttgtatcaattatgttaagctcattgtgaatttgtgata
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AGACAAAACCTTGATTTCAGCTATTTACAATTCCGTGTTCTTGATGAAGCTGATGAAATGTTGAGGATGGGATTTGTTGAGGATGTTGAACTTATTTTAGgtatgtcgtggttttggttttttttccta-atatgaaacag------------cttactctttgtatcttatatgtt---ctttctataacttcag----
upper sequence: GLYMA10G38680.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0022g02110.t01 (Vitis vinifera), 5'ss of exon 4
AAGGGAAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGATGAAGCCGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttttttccttttatttt-caatgcatg--ggcatcaagtgctgccaagtctcaatttttgtatcaattatgttaagctcattgtgaatttgtgata
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AGGGGAAATATTGACTTCAGCTCTTTAAAGTTCCGTGTCCTTGATGAGGCTGATGAAATGTTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTAGgtatgttaatcatcatttaggggtgcattgttttatgatatttcttgattttctgaattaaattatg-aaaagcagaattaaataaattctccatttatgt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151412885|gb|EV282697.1|EV282697EST: GTTTTGTTGAAGATGTTGAAATGATTCTAG GCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTT
genomic: GTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttt ... tattttgcagGCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGGGAAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGATGAAGCCGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttttttccttttattttcaatgcatgggcatcaagtgctgccaagtctcaatttttgtatcaattatgttaagctcattgtgaatttgtgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG