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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataacatttgctgtgattattattttaaattaaaagtgagtaattaattttatttgtttgcgctttgctctgctcattagagcatccaaatgaa...

Basic information

species Glycine max
transcript GLYMA10G37720.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37720.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0083g00950.t01 (Vitis vinifera), 5'ss of exon 3
CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataacatttgctgtgattattattttaaattaaaagtgagtaattaattttatttgtttgcgctttgctctgctcattagagcatccaaatgaa---
 |||||||| |||||||| ||||||||  ||||| |  |||| || || |||||| | ||||||||||| |||||||||    |     |       |||       | ||  |   |   |  | ||  ||||   |||    ||     |    |  | |  ||| |||  |    
GTACAACATTGGTGTGATACCAACCAGAAAAAGCTTGGCACTGTGTGATCGCTTAGCGGTGTCATCCTTTTGTAGgtaagtgaattggctataacagttacacgcacacatgtactttatattttcaaaattatactttt---tttaagattcaagaccatactatcaaaagtagaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207750999|gb|GD723048.1|GD723048
EST:     AGACAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCG
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCG
EST: gi|151407029|gb|EV276844.1|EV276844
EST:     AGGCAAAGTATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|193720055|gb|FK653939.1|FK653939
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAA-TTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|193421658|gb|FK386219.1|FK386219
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGACTGAGCACT
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTG-CTGAGCACT
EST: gi|208081615|gb|GD879945.1|GD879945
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTG
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTG
EST: gi|207711447|gb|GD693601.1|GD693601
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACCTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|208136558|gb|GD934156.1|GD934156
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAG
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAG
EST: gi|193423349|gb|FK390626.1|FK390626
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|193678476|gb|FK618866.1|FK618866
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTG
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTG
EST: gi|208149676|gb|GD947680.1|GD947680
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|208229560|gb|GE022964.1|GE022964
EST:     AGGCAA-GCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|193420490|gb|FK390483.1|FK390483
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACT
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACT
EST: gi|208075944|gb|GD873375.1|GD873375
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|193374303|gb|FK342083.1|FK342083
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|193327736|gb|FK295493.1|FK295493
EST:     AGGCAGAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGCGCGACTAAAATTTGCTG
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTG
EST: gi|193323889|gb|FK290069.1|FK290069
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGGGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|208116415|gb|GD914502.1|GD914502
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAG
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAG
EST: gi|207731699|gb|GD708040.1|GD708040
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAA
EST: gi|57574334|gb|CX547309.1|CX547309
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|192295691|gb|FG990545.1|FG990545
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|207700526|gb|GD683633.1|GD683633
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|208271655|gb|GE069655.1|GE069655
EST:     GGTCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: GG-CAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|208263353|gb|GE061065.1|GE061065
EST:     AGGCAAAGCATCACACTCTGCGAACGCTCAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTATTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|193651789|gb|FK595534.1|FK595534
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|193392005|gb|FK353362.1|FK353362
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|207777260|gb|GD750441.1|GD750441
EST:     AGGCAA-GCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: gi|58014941|gb|CX701683.1|CX701683
EST:     AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG                         GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataacatttgctgtgattattattttaaattaaaagtgagtaattaattttatttgtttgcgctttgctctgctcattagagcatccaaatgaa

- - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa