1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGCAAAACGGACAAGAAGAACAACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAGgtaagacttaattttgggtactcgtttggggcttacttgacattcatttttgcacttacaatcattgacttgtataatatcttaggctatgcataattgtttttccataatccaagaagttgtgcaagaaatcaattgtttctgtgctttcttgtcatgatgtacttatactatattacatttttcttgtttcag
species | Glycine max |
transcript | GLYMA10G36940.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAG GTCTAATTTTCTTGG-ACCAAGTTT-TAATTTATGATACGCAACCEST: gi|192301224|gb|FG988989.1|FG988989
genomic: GATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAGgtaagactta ... cttgtttcagGTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACGCAACC
EST: GATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGGG GTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACGCAACCTCCCTAEST: gi|20449612|gb|BQ253736.1|BQ253736
genomic: GATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAGgtaagactta ... cttgtttcagGTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACGCAACCTCCCTA
EST: GATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAG GTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACGCAACCTCCCTAEST: gi|21678447|gb|BQ630798.1|BQ630798
genomic: GATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAGgtaagactta ... cttgtttcagGTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACGCAACCTCCCTA
EST: GATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAG GTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACGCAACCTCCCTAEST: gi|6341681|gb|AW164505.1|AW164505
genomic: GATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAGgtaagactta ... cttgtttcagGTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACGCAACCTCCCTA
EST: GATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAG GTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACGCAACCTCCCTA
genomic: GATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAGgtaagactta ... cttgtttcagGTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACGCAACCTCCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCAAAACGGACAAGAAGAACAACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTGAGgtaagacttaattttgggtactcgtttggggcttacttgacattcatttttgcacttacaatcattgacttgtataatatcttaggctatgcataattgtttttccataatccaagaagttgtgcaagaaatcaattgtttctgtgctttcttgtcatgatgtacttatactatattacatttttcttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC