1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TAAGCAGTATGAAACTGAGGAGGGAAAGAAAAACATTGAGGCGCAGCTGGAGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccccacattaatgtgattgcataccttttctttgtttccctgatttcattttatataatggttgttacatatataatgatagtttagcacttt...
species | Glycine max |
transcript | GLYMA10G36780.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAAACTGAAGAGGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|209718971|gb|BW674811.1|BW674811
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|209699676|gb|BW655742.1|BW655742
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|193350614|gb|FK317534.1|FK317534
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|13251819|gb|BG362722.1|BG362722
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|7042244|gb|AW472138.1|AW472138
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: GAAACTGAAGAAGTATGCTACTGTGGTTCGTGTGTTTG-CTCACACTCAT ATCAAGAAAATGAEST: gi|209717595|gb|BW671491.1|BW671491
genomic: GAAACTGAAGAAGTATGCTACTGTGGTTCGTGT-TTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGA
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|120532147|gb|EH260280.1|EH260280
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|193629995|gb|FK578537.1|FK578537
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|7685799|gb|AW756447.1|AW756447
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|193593727|gb|FK545367.1|FK545367
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|209729583|gb|BW655159.1|BW655159
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|151398239|gb|EV268117.1|EV268117
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|8827243|gb|BE210973.1|BE210973
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCATGAAAATGAAACGGTTGAAGCAGAAGAAGGCCCCTGTCATGGAAEST: gi|209711914|gb|BW678993.1|BW678993
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAA
EST: AGAAACTGAAGAAGTATGTTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|213601307|gb|DB956559.1|DB956559
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|209705363|gb|BW668007.1|BW668007
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: GAAACTGAAGAAGTATGCTACTGGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAEST: gi|7924415|gb|AW830441.1|AW830441
genomic: GAAACTGAAGAAGTATGCTACTG-TGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGA
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTTGCTCACACTCAG ATCACGAAAATGAAATGGTTGAAGCAGAAGATAGCGCATATCATGGAAATTEST: gi|7042701|gb|AW472595.1|AW472595
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|4396023|gb|AI495020.1|AI495020
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: TGTTTTGGCTCACACCCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|15814258|gb|BI786533.1|BI786533
genomic: TGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|209706622|gb|BW676143.1|BW676143
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|6747549|gb|AW318005.1|AW318005
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|298166741|gb|HO010180.1|HO010180
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|213616738|gb|DB971249.1|DB971249
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATEST: gi|209716133|gb|BW668659.1|BW668659
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAAT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCC-ATATCATGGAAATTEST: gi|58016492|gb|CX703234.1|CX703234
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGCCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|7147554|gb|AW509476.1|AW509476
genomic: AAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTGTTGACTCACACTCAC ATCACGAAAATGACAAGG-TTGAAGCAGAAGAAAGCCCATATCATGGAAATEST: gi|22522850|gb|BU081661.1|BU081661
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGA-AAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAAT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|33390387|gb|CA853582.1|CA853582
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|58022760|gb|CX709501.1|CX709501
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: TGAAGAAGTATGCTACTGTGGTTCGTGTTTGGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGAAAATTEST: gi|6913249|gb|AW394779.1|AW394779
genomic: TGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAAATEST: gi|209699780|gb|BW655793.1|BW655793
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGG-AAAT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|298179744|gb|HO024959.1|HO024959
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|209718048|gb|BW671881.1|BW671881
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTEST: gi|213596684|gb|DB956048.1|DB956048
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG ATCAGGAAAATGAAAGGGTT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGCAGTATGAAACTGAGGAGGGAAAGAAAAACATTGAGGCGCAGCTGGAGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccccacattaatgtgattgcataccttttctttgtttccctgatttcattttatataatggttgttacatatataatgatagtttagcacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accccac