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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGgtgaaaaccttttattctaatccgtctgtttatgtttgtctggtgagggtgggagggaaggaggaactaggaagccaatcagaaataatcaaatttatgg...

Basic information

species Glycine max
transcript GLYMA10G36580.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36580.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g19460.1 (Oryza sativa), 5'ss of exon 3
ATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGgtgaa--aaccttttattctaatccgtctgtttatg-tttgtctggtgagggtgggagggaaggaggaactaggaagccaatcaga--aataatcaaatttatgg
| |||   || |||||||||||||| ||||||||||| || |||||| | || || |||||||| || |||||  | || |||||     |||    |||  || ||  |   | |    |||||    |  | ||       ||    |  |    ||  |  ||  |  |||  | | ||      
AGGGTGTAATAGCTGGAGGTGCTGCCGGTGTTGTTGTTGAGACAGCTCTGTATCCTATTGATACAATAAAAACCAGGCTTCAGgtatgttaactgcatatggtattctcttaatgtgcaatttgttcattaggtgtctccaaaaatcgtgctcccaaaactctttcgaaccaatgtttacata-----

upper sequence: GLYMA10G36580.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G169914_T03 (Zea mays), 5'ss of exon 2
ATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGgtgaaaaccttttattctaatccgtctgtttatgtttgtctggtgagggtgggagggaaggaggaactaggaagccaatcagaaataatcaaatttatgg--------
| ||   | | |||||||| ||||||||||||||||| |||||||||||||| || |||||||| || || ||  | || ||||| |     |||||   |     |         |||||||| |      |   | | ||  |  |      |||    |||    |  ||  ||  ||||        
AGGGGGCCTTGGCTGGAGGAGCTGCTGGTGTTGTTGTTGAAACAGCTTTATATCCTATTGATACAATAAAGACCAGGCTTCAGgtaagctgattttacatttgaatgcagcaccccgtttgtctagct----tatcatgcaaccatcattctccaagttgttca----ttctcggatgcatggtaatacac

upper sequence: GLYMA10G36580.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G34065.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGgtgaaaaccttttattctaatccgtctgtt---------tatg---tttgtctggtgagggtgggagggaaggaggaactagga-----agccaatcagaaataatcaaattta-tgg--------------
|   |   ||  | |||||    ||||||||||| || ||| | ||||| || || |||||||| |||||||||||| |||||||     |   | |  | |||  || ||||          ||    | | | |  | |   | | |  ||  |    |||| ||          |     |||    || | || |||              
AGTCTCTGATAACAGGAGGGTTAGCTGGTGTTGTGGTGGAAGCTGCTTTGTATCCAATTGATACAATCAAAACTCGAATACAGgtagtttctcctcaaaccaatttgtgtgttatcatccaacataagctcttttttattattattgtaatgagagtcagactatgaccaatgcttgacttacaatggctaactatagtggtttgacatggttag

upper sequence: GLYMA10G36580.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0157g00180.t01 (Vitis vinifera), 5'ss of exon 3
ATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGgtgaaaaccttttattctaatccgtctgtttatgtttgtctggtgagggtgggagggaaggaggaactaggaagccaatcagaaataa--tcaaatttatgg
| |||    | |||||||||  ||||||||||||||| ||| |||||||||| || |||||||| || |||||| |||| ||||          | |    ||| |   | || ||  | || || |     | |              ||       || |    | | |  | |||| ||   
AGGGTCTTGTAGCTGGAGGTATTGCTGGTGTTGTTGTTGAAGCAGCTTTATATCCAATTGATACAATAAAAACTAGACTTCAGgctggt-taactaaactgaatactattcttaatcatagtatgctttatattgccaatcctagcattctctatgttcatttcagactgaatttaaatctaaa-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330015|gb|FK020831.1|FK020831
EST:     TTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAG                         GTTGCTCGCGACGGAGGGAAAATTGTTTTGAAGGGTCTGTACTCTGGGTTG
genomic: TTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGgtgaaaacct ... cctatatcagGTTGCTCGCGACGGAGGGAAAATTGTTTTGAAGGGTCTGTACTCTGGGTTG
EST: gi|192328563|gb|FK020781.1|FK020781
EST:     TTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAG                         GTTGCTCGCGACGGAGGGAAAATTGTTTTGAAGGGTCTGTACTCTGGGTTG
genomic: TTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGgtgaaaacct ... cctatatcagGTTGCTCGCGACGGAGGGAAAATTGTTTTGAAGGGTCTGTACTCTGGGTTG
EST: gi|192328905|gb|FK021374.1|FK021374
EST:     TTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAG                         GTTGCTCGCGACGGAGGGAAAATTGTTTTGAAGGGTCTGTACTCTGGGTTG
genomic: TTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGgtgaaaacct ... cctatatcagGTTGCTCGCGACGGAGGGAAAATTGTTTTGAAGGGTCTGTACTCTGGGTTG