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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTGAACCATTTCACTGGCCCAATCCCAGATTCGTTGGGCAAGTTGTCAAAATTGCGTTTCCTgtgagtatacttgttctatctatgctgtggacagtctgattattttttaaaatgtcaatgactagtatttttctgttcaagggtaaaatcttgttctggtgcttgtcaatctcttcgttcttgattttttggatatcaggatagatcttaattctgtttatctattatgtctaaggatag

Basic information

species Glycine max
transcript GLYMA10G36280.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 4
TGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTGAACCATTTCACTGGCCCAATCCCAGATTCGTTGGGCAAGTTGTCAAAATTGCGTTTCCTgtgagtatacttgttctatctatgctgtggacagtctgattattttttaaaatgtcaatgactagtatttttctgttcaagggta--aaatcttgttctggtgcttgtcaatctcttcgttcttgattttttggatatcaggatagatcttaattctgtttatctattatgtctaaggatag
| ||||||||||| |||||||| || |||||| ||||| ||||| | |||||||| || || |||||||| ||||| ||| | |  ||  |||| ||| ||| || ||| |     |   | | |       |||     ||   |  ||  ||| ||      | || |||  | | | |   |   |||||   || | |                                                                                
TTGGGAATCTTACAAACTTGGTCAGTTTGGATTTGTACTTGAACAACTTCACTGGTCCCATACCAGATTCATTGGGGAAGCTATTGAAGCTGCGGTTCTTgtaag-atattcacattgattttccct--actagttactgtagagtaaaacctgttaagagtaggaatcttttggcttacgcacactgaatctatctcagtta-------------------------------------------------------------------------------

upper sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 4
TGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTGAACCATTTCACTGGCCCAATCCCAGATTCGTTGGGCAAGTTGTCAAAATTGCGTTTCCTgtgagtatacttgttcta------tctatgctgtggacagtctgattattttttaaaatgtcaatgactagtatttttctgttcaagggtaaaatcttgttctggtgcttgtcaatctcttcgttcttgattttttggatatcaggatagatcttaattctgtttatctattatgtctaaggatag
| |||||||| |||| |||||||||||||||||| ||  |||||  ||| ||||| || ||||| ||  | ||||||||| | ||||| ||||| |||||||| |||||||| | ||       |  ||  ||| |    | |  ||||||||| | | ||   | | | ||| |||  | |      ||    |||||||                                                                                     
TTGGGAATCTAACTAGCTTGGTGAGCTTGGATCTTTATTTGAACAGTTTTACTGGTCCCATCCCGGAGACATTGGGCAAGCTATCAAAGTTGCGCTTCCTgtgtgtatacttatccttctctttttcattttgtagtttatttatttattttttgataggtt--tcatttgtagtttaatatct----gtttgttcttgttacatc--------------------------------------------------------------------------------