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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTGGGACTTTCTTTGTGATTCGCCAAGTTCTTGTCCGCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAGgtaagagcctatgcatcttccttttggtcctttagatcttgagcaagacatatggtactaagtactaacctcaaaatatattataccctgaattttatgt...

Basic information

species Glycine max
transcript GLYMA10G35950.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35950.3 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g32300.1 (Oryza sativa), 5'ss of exon 4
-------------------------GGAG-TGGGACTTTCTTTGTGATTCGCCAAGTTCTTGTCCGCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAGgtaagagc-ctatgcatcttccttttggtcctttagatcttgagcaagaca-tatggtactaagtactaacctcaaaatatattataccctgaattttatgt---
                         |||| ||| || || ||||| ||||| |||||||||||||| ||||| || || || ||||||||||||||||||||||  |  ||    |   | |||      || |||  |   | || | || | |  || |||  ||  | |  || | | | |   | |||||| |    |   
TCTTCTCATACTACTTGGTCTTCTTGGAGCTGGTACATTTTTTGTCATTCGTCAAGTTCTTGTCCGTAGAGAGCTTGATCTTTCTGCCAAAGAGTTGCAGgtaaatgtgctgccaacactacttccaa--ctgtagtacc--accaggtcaattttatattaaaaacctatcagaata-acagtgagctctgaatgtgcaatagt

upper sequence: GLYMA10G35950.3 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g25890.1 (Oryza sativa), 5'ss of exon 1
-------------------------GGAG-TGGGACTTTCTTTGTGATTCGCCAAGTTCTTGTCCGCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAGgtaagagcctatgcatcttccttttggtcctttagatcttgagcaagacatatggtactaagtactaacctcaaaatatattataccctgaatttt-atgt--
                         |||| ||| || || || || || || || ||||||||||||||||| || || || ||||||||||| ||||||||||         || |    ||| |  |  |     |    |  |   || |  || | |  ||    |  ||      | |     ||| |||  | ||  
TCTTCTCATACTACTTGGTCTGCTTGGAGCTGGTACATTTTTCGTCATCCGTCAGGTTCTTGTCCGCAGAGAGCTTGATCTTTCTGCCAAAGATTTGCAGgtaaatatgctgccaacactatttcgaactgtactgccacaggtca---atttcatattcaaaacctttcagaatcaccgtaaagttttgagtttagaagttc

upper sequence: GLYMA10G35950.3 (Glycine max), 5'ss of exon 4
lower sequence: AT1G22700.3 (Arabidopsis thaliana), 5'ss of exon 3
-------------------------GGAGTGGG-ACTTTCTTTGTGATTCGCCAAGTTCTTGTCCGCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAGgtaagagcctatgca-tcttccttttggtcctttagatcttgagcaagacatatggtactaagtactaacctcaaaatatattataccctgaattttatgt--
                         ||||| || ||||||| |||||| || ||||| ||||| ||||||||||| ||||| || || ||||| |||||||||  || | |||   ||||  |  | |        |   | || ||   | |||| ||  ||| |||   |  | || || |||    ||  | |  | |  
CTTGCTGTTACTACTGGGGTTGCTTGGAGTTGGTACTTTCTATGTGATCCGTCAAGTACTTGTACGCAGAGAACTAGACCTCTCCGCTAAAGAATTGCAGgtaccagacaatgtgctctttgtggtagaaaacagtaggataagtaactgagatggaac-gagt-ctagagtagagatgtaatat-tgatgtctctcgtatca

upper sequence: GLYMA10G35950.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0072g00860.t01 (Vitis vinifera), 5'ss of exon 4
-------------------------GGAGT-GGGACTTTCTTTGTGATTCGCCAAGTTCTTGTCCGCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAGgtaagagcctatgcatcttccttttggtcctttagatcttgagcaagacatatggtactaagtactaacctcaaaatatattataccctgaattttatgt
                         ||||| || || || ||||||||||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||| ||||||  |||  | |  |   |||  |  |||   |  |         |  |  |  | | || | |        | | |||     |  | || ||  
CCTTCTTTTACTGTTAGGTTTGATTGGAGTTGGAACCTTTTTTGTGATTCGTCAAGTCCTTGTTCGTAGAGAACTTGACCTTTCTGCTAAAGAATTGCAAgtaagattctagtccttctttatttattattttcatttatccttttccaacctttttttgaatattgatgaatctttcttttagcatttatagttgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994168|gb|BQ785696.1|BQ785696
EST:     GCCAAGTTCTTGTCCGCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAG                         GAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGT
genomic: GCCAAGTTCTTGTCCGCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAGgtaagagcct ... attatctcagGAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGT
EST: gi|16106191|gb|BI893931.1|BI893931
EST:     GCCAAGTTCTTGTCCGCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAG                         GAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGT
genomic: GCCAAGTTCTTGTCCGCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAGgtaagagcct ... attatctcagGAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGT
EST: gi|192310568|gb|FG999563.1|FG999563
EST:     GCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAG                         GAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGT
genomic: GCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAGgtaagagcct ... attatctcagGAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGT