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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAAATTCCTGCTGGAAGCGTTCTGAGATCTGCATTGGCAGGTGGCCTTTCTTGTGCCCTGTCATGTGCGTTACTGCATCCAGTTGATACCATTAAGgtatgctcttgaactttcatgaacttatttatttctctggtgatttcatgtctttgtttgtataatgcatataattccatattcctctcttagctgtttgatttttttggtttcttttagaggcctcatcattgtcttatttggtatattag

Basic information

species Glycine max
transcript GLYMA10G35730.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35730.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g03870.t01 (Vitis vinifera), 5'ss of exon 3
TGTTGAAATTCCTGCTGGAAGCGTTCTGAGATCTGCATTGGCAGGTGGCCTTTCTTGTGCCCTGTCATGTGCGTTACTGCATCCAGTTGATACCATTAAGgtatgctcttgaactttcatgaact-tatttatttctctggtg-atttcatgtctttgtttgtataatg-catataattccatattcctctcttagctgtttgatttttttggtttcttttagaggcctcatcattgtcttatttggtatattag
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TGTGGAAATATCTGCTGGAAGTGTTCTGAGATCTGCATTGGCAGGGGGCCTTGCATGTGCACTTTCTACCTCTTTACTGCATCCTGTTGATACGATAAAGgcaagttctcccactca-ataatttgtagtaatgtgctagatggaagtgacatgataaattttttaacaatttatggattc-taggcctatgttgccctgtt-----------------------------------------------------