1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATTTCTAAAGTTCATCTTTATAGTTAACTTTCTAACTTCTCTCTGCATTTTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCTgtgagtatttaatatctactttcatatgatatgatgttttctgtcggttgttcatgttgttatctgattttctctctgtttattatatttccctttggca...
species | Glycine max |
transcript | GLYMA10G35620.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCT TTATATGCCATTCTCTGGATTTEST: gi|207804260|gb|GD775851.1|GD775851
genomic: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCTgtgagtattt ... gctcttctagTTATATGCCATTCTCTGGATTT
EST: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCT TTATATGCCATTCTCTGGATTTEST: gi|193641383|gb|FK588107.1|FK588107
genomic: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCTgtgagtattt ... gctcttctagTTATATGCCATTCTCTGGATTT
EST: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCT TTATATGCCATTCTCTGGATTTCATGGAGTTATATTTGGCTTCTTGGTTGGEST: gi|208233970|gb|GE028645.1|GE028645
genomic: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCTgtgagtattt ... gctcttctagTTATATGCCATTCTCTGGATTTCATGGAGTTATATTTGGCTTCTTGGTTGG
EST: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCT TTATATGCCATTCTCTGGATTTCATGGAGTTATATTTGGCTTCTTGGTTGGEST: gi|208247328|gb|GE047516.1|GE047516
genomic: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCTgtgagtattt ... gctcttctagTTATATGCCATTCTCTGGATTTCATGGAGTTATATTTGGCTTCTTGGTTGG
EST: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCT TTATATGCCATTCTCTGGATTTEST: gi|193398901|gb|FK362583.1|FK362583
genomic: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCTgtgagtattt ... gctcttctagTTATATGCCATTCTCTGGATTT
EST: TCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTTACCT TTATATGCCATTCTCTGGATTTEST: gi|193634044|gb|FK581558.1|FK581558
genomic: TCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTT-ACCTgtgagtattt ... gctcttctagTTATATGCCATTCTCTGGATTT
EST: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCT TTATATGCCATTCTCTGGATTT
genomic: TTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCTgtgagtattt ... gctcttctagTTATATGCCATTCTCTGGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTCTAAAGTTCATCTTTATAGTTAACTTTCTAACTTCTCTCTGCATTTTCATCACTGCTATTGCTTTGTACTGCATTACAGGGCAGGAGAGTTACCTgtgagtatttaatatctactttcatatgatatgatgttttctgtcggttgttcatgttgttatctgattttctctctgtttattatatttccctttggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA