Sequence
atgc intronic sequence ATGC exonic sequenceTTGGTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattgaaaactgtctttattgccatttatttaccgtcaaacatttctttctcttgatgaattttgaaagatagggcaaattattggttattggcag...
Basic information
species | Glycine max |
transcript | GLYMA10G35610.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G35610.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G39190.2 (Arabidopsis thaliana), 5'ss of exon 4
TTGGTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattgaaa--actgtctttattgcc---atttatttaccgtcaaacatttctttctcttg---------atgaattttgaaagatagggcaaatta---ttggttattggcag--------------------------------------------
||||||| || |||||||| ||||||||||||||||| ||| || |||||||| |||| ||| | ||| ||| | || | || | | || | ||||||| || || | || || ||| || |||||| || ||
TTGGTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAAGgtcagatagaagttatggtcacatttgtctaaatctcttagcttttaatagtgtctttctggtgcatgtttccattgttctttctctattctgcatgctacatttggttgttcttagggatgtagctgtctgactatgtttgttatgatttgaaactgcag
upper sequence: GLYMA10G35610.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g04130.t01 (Vitis vinifera), 5'ss of exon 4
TTGGTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattgaaaactgtctttattgccatttatttaccgtcaaacatttctttctcttgatgaattttgaaagatagggcaaattattggttattggcag
||||||||||| |||||||||| ||||||||||||||| || || ||||||||||||| | | | || | | |||| | | | | | || | || ||| | | || | |
TTGGTCAGTCCATTTCCACAAGACCAGATATCATTGGTCCAGAAATTTCCAAGgttagatggtggatatttttctattctattttgcattaatgcatttactgtctgctatgttaaaatttcttccttctaagcaggtacaactctgcaactaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27426462|gb|CA937982.1|CA937982EST: GTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAG GCATTGTCAGAATTGCATGATCAAATCCCTCCTTTTCCCAGGACTGTTGCT
genomic: GTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattga ... cttcttgcagGCATTGTCAGAATTGCATGATCAAATCCCTCCTTTTCCCAGGACTGTTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattgaaaactgtctttattgccatttatttaccgtcaaacatttctttctcttgatgaattttgaaagatagggcaaattattggttattggcag
- - - - - - - - - - - - - - - - - - - - GAGATG