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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGCTGCATGGTTAATGGAGAAAAAGAAAGCTGATGCTTCTCAGCATTTGAGAGTTTCTATTGGCCATGATTCCCGAATATCAGCCAAATTATTACAGgtttagattgttccttatatcatttggttaagtttttttctgcccacctttaacatataataaaggattgttggttgtgttaaatttttatgatggtttt...

Basic information

species Glycine max
transcript GLYMA10G35490.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35490.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 4
TTTTGCTGCATGGTTAATGGAGAAAAAGAAAGCTGATGCTTCTCAGCATTTGAGAGTTTCTATTGGCCATGATTCCCGAATATCAGCCAAATTATTACAGgtttagattgttccttatatcatttggt-taagtttttttctgcccacctttaacatataataaaggattgttggttg-tgttaaatttttatgatggtttt----
 |||| ||| |||||  | || || |||||||||||||  |||   |   |||||||||| ||||||||||||||||||||||| ||| ||   || |||||    ||  ||||  |||| | |  || |     |  ||||     |  | ||   |  ||  |   ||  | |||| |    ||||||   ||      |    
CTTTGGTGCCTGGTTGTTAGAAAAGAAGAAAGCTGATGGATCTAGACGACTGAGAGTTTCCATTGGCCATGATTCCCGAATATCTGCCCAAAAGTTGCAGgt----atgtttcccaatattagtatgtgttgagatgattctagtggc--taaatgaaatatttatccttcctagttgatacctaattttgcagagacacatggac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394480|gb|EV264351.1|EV264351
EST:     TGAGAGTTTCTATTGGCCATGATTCCCGAATATCAGCCAAATTATTACAG                         AATGCAATTTCTCGAGGTCTTGCTGGTGCTGGCCTAGAAGTTGTCCACTAT
genomic: TGAGAGTTTCTATTGGCCATGATTCCCGAATATCAGCCAAATTATTACAGgtttagattg ... caaatttcagAATGCAATTTCTCGAGGTCTTGCTGGTGCTGGCCTAGAAGTTGTCCACTAT