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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGACTCAACCGATATTTGCTGAATACATTGGGAAGTATCAGATCAAAGCGATTGATTTTGATGAGTTAAGCCTTGGTACTCTTCCTCCTACTGTCTGTGgtaagtcttttcccagatcatcttattttttgtgcaaatattttatccagtcttctgcccagtaatacaaataatacaaatgtctgtcatattatatgaa...

Basic information

species Glycine max
transcript GLYMA10G35410.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35410.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g04450.t01 (Vitis vinifera), 5'ss of exon 4
ACGACTCAACCGATATTTGCTGAATACATTGGGAAGTATCAGATCAAAGCGATTGATTTTGATGAGTTAAGCCTTGGTACTCTTCCTCCTACTGTCTGTGgtaagtcttttcccagatcatcttattttttgtgcaaatattttatccagtcttctgcccagtaatacaaataatacaaatgtctgtcatattatatgaa--
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ATGGCACAGCCCATATTTGCTGAATACATTGGGATGTATCAGATTGAAGCAATTGAGTTTGAGAAGCTGAGTCTTGGAACCCTTCCTCCTATACTTCATGgtgagtatgctctgggttcatct-acttgttgactgaatagtttttttgagtccagaaagtttcattgggttagtttcg-tgtctagcatgctcaagcagac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599772|gb|DB968422.1|DB968422
EST:     GATTGATTTTGATGAGTTAAGCCTTGGTACTCTTCCTCCTACTGTCTGTG                         GTATGAAAGTTTTAGAAACAAATGAAAAGGAATTGGTCATGGAACAAGTTA
genomic: GATTGATTTTGATGAGTTAAGCCTTGGTACTCTTCCTCCTACTGTCTGTGgtaagtcttt ... aattctgcagGTATGAAAGTTTTAGAAACAAATGAAAAGGAATTGGTCATGGAACAAGTTA