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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATTCATATGTTCTAATATTCATAATGATGTATCGAAAGGACTGCAAAGAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAgtaagctttccttggaattgaatctattctggacttgggcatgatgtttttctgttttatatctctatgccaacagcataaatcagtatttttcttgtgtag

Basic information

species Glycine max
transcript GLYMA10G35210.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35210.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G003734_T01 (Zea mays), 5'ss of exon 5
GAGATTCATATGTTCTAATATTCATAATGATGTATCGAAAGGACTGCAAAGAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAgtaagc----tttccttggaattgaatctattctggacttgggcatgatgtttttctgttttatatctctatgccaacagcataaatcagtatttttcttgtgtag
||  |||||      | | ||  | || |||| | | ||||| || || || |||||     |||| ||||| |||||||||||||||| ||||||||| |||       ||   ||    ||  | ||| ||      ||||  | || |  |  |  ||  | | |   ||     || |||  |  ||  |  ||   | |  
GAAGTTCATCGCAAGTCAAATCAAGAACGATGAACCTAAAGGGCTCCAGAGGGAATACTTCCTTTACTTTGTACCTCGCCGCACTGTTGCTTGTGAGAAGgtatctgttattcttttcatgtttgaactaatccactagtgggttttatatcgtgtt--ttcgtgtatgggtgatg-tagaatacttt-gtgatgctcagatct--

upper sequence: GLYMA10G35210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g04720.t01 (Vitis vinifera), 5'ss of exon 4
GAGATTCATATGTTCTAATATTCATAATGATGTATCGAAAGGACTGCAAAGAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAgtaagctttccttggaattgaatctattctggacttgggcatgatgtttttctgttttatatctc-tatgccaacagcataaa---tcagtatttttcttgtgtag---------------------------
|| ||| ||||| ||  |||||| ||||||| | || |||||||| |||||||| |||  |||||||||||||||||||||  |||||| ||||||||| || ||| || ||| |  ||   |||| |     ||  |   ||||| | ||    |  |||  |  |||     | | | | |   |  |  |   | |||  |                             
GAAATTTATATGCTCGCATATTCGTAATGATATTTCAAAAGGACTTCAAAGAGAGTATTTTGTTTATTTTGTCCCTCGCCGTGCTGTTGCTTGTGAGAAGgtgagcctttcttagcctttgttctactaattgctatgatttgatgatctttacatacatacgtgatatattttctgtagagagactttgggtagcttttggttgctctaatacataaaaattcatggtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611506|gb|DB960786.1|DB960786
EST:     GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAA                         GTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCC
genomic: GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAgtaagctttc ... tcttgtgtagGTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCC
EST: gi|207766199|gb|GD737729.1|GD737729
EST:     GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAA                         GTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCC
genomic: GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAgtaagctttc ... tcttgtgtagGTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCC
EST: gi|193349941|gb|FK314523.1|FK314523
EST:     GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGNGAGAAA                         GTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATACCCC
genomic: GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAgtaagctttc ... tcttgtgtagGTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCC
EST: gi|193435330|gb|FK399900.1|FK399900
EST:     GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAA                         GTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATAACCC
genomic: GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAgtaagctttc ... tcttgtgtagGTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCC
EST: gi|193352315|gb|FK314289.1|FK314289
EST:     GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAA                         GTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATACCCC
genomic: GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAgtaagctttc ... tcttgtgtagGTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCC
EST: gi|207829470|gb|GD803598.1|GD803598
EST:     GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAA                         GTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCC
genomic: GAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAgtaagctttc ... tcttgtgtagGTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCC