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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGgttactacacatattgcactaacaccctcgcttttttcgtttcctcttctttataaatatatgttattaacagtgctctacttttctcactacctacttcattatgatcaatttttttttgttgaatttcag

Basic information

species Glycine max
transcript GLYMA10G35040.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35040.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0010g02070.t01 (Vitis vinifera), 5'ss of exon 4
GTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGgttactacaca--tattgcactaac---accctcgcttttttcgtttcctcttctttataaatatatgtta-ttaacagtgctctacttttctcactacctacttcattatgatcaatttttttttgttgaatttcag
 ||||||| || ||||||||| | || || |  |||||||| ||||||||||||||||| || |||||||||||| | ||| |   | |  | |      |||    ||||||   |||||| || | ||| | | | | | | ||||| |  |||  ||| | |  | |                                        
ATGCAGGCCCCGAAAGTCAAGATTGGAGATAGGATCACAGCTCTTCAGCAAATTGTGTCGCCTTTTGGAAAGgttccaacaaaagcacttaatttgtttaaccagaactttttctttttccttttttgtattattttctttaaattaactgaactc--cttatatttccag---------------------------------------