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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCACACCAAAGCAAATTAGAGAGATAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGgtatgttagttatataggatgatttgtataacccaattcccaaacttttgctatcaaatttggcttaagctagtaaagtcataattggagtctttttgct...

Basic information

species Glycine max
transcript GLYMA10G34780.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34780.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 4
CTGCCACACCAAAGCAAATTAGAGAGATAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGgtatgttagttatataggatgatttgtataacccaattcccaaacttttgctatcaaatttggcttaagctagtaaagtcataat-tggagtctttttgct------
 ||| || |||||||| || || ||  | ||||| |||||||| || || ||||||||||||||||||||||| ||||| |||     ||| |   |   | | |  | | ||  |   |   |||| |||   ||||   ||  | || |  | || || | ||||  ||  | | |      
TTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGgtttgt-----ataaaactttcctcgaagtagcaaaaacttta-tctttgttatgtcattttcattttggtaattca-tcttagtatggatcctgatggatgctagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204658|gb|BI427426.1|BI427426
EST:     TAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAG                         AAATACCGTTTGCACACTAGAAGGCCAAGTCCCATGGTTCACAACAGTTCC
genomic: TAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGgtatgttagt ... ttttggacagAAATACCGTTTGCACACTAGAAGGCCAAGTCCCATGGTTCACAACAGTTCC