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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAGgttttacattactccatttttattcttgctttggattctgcactgcatctaaatagaatactaatcttccctgaggaatagtagtggcctgaaagtcctg...

Basic information

species Glycine max
transcript GLYMA10G34010.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018810|gb|CX705552.1|CX705552
EST:     GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAG                         GTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT
genomic: GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAGgttttacatt ... tatacctcagGTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT
EST: gi|298191014|gb|HO038493.1|HO038493
EST:     GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAG                         GTATTTAAGGAGTCAAAGATTGTGGAGTATAGTATCAAAGAAAATATGGTT
genomic: GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAGgttttacatt ... tatacctcagGTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT
EST: gi|15288312|gb|BI472203.1|BI472203
EST:     GGTGAAACTGATCAAATCAGCGTTCTATACTCTTCCCAAG                         GTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT
genomic: GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAGgttttacatt ... tatacctcagGTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT
EST: gi|298180389|gb|HO025590.1|HO025590
EST:     GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAG                         GTATTTAAGGAGTCAAAGATTGCGGAATATAGTATCAAAGAAAATATGGTT
genomic: GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAGgttttacatt ... tatacctcagGTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT
EST: gi|58018996|gb|CX705738.1|CX705738
EST:     AACAGATCAAATCAGCGTTCTATACTCTTCCCAAGG                         GTATTTAAGGAGTCAAAAGATTGTGGAATATAGTATCAAAGAAAATTATG
genomic: AACAGATCAAATCAGCGTTCTATACTCTTCCCAA-Ggttttacatt ... tatacctcagGTATTTAAGGAGTC-AAAGATTGTGGAATATAGTATCAAAGAAAA-TATG
EST: gi|51337031|gb|CO980897.1|CO980897
EST:     GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAG                         GTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT
genomic: GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAGgttttacatt ... tatacctcagGTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT
EST: gi|298180981|gb|HO022420.1|HO022420
EST:     GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAG                         GTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT
genomic: GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAGgttttacatt ... tatacctcagGTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT
EST: gi|151402430|gb|EV272243.1|EV272243
EST:     GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAG                         GTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT
genomic: GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAGgttttacatt ... tatacctcagGTATTTAAGGAGTCAAAGATTGTGGAATATAGTATCAAAGAAAATATGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGAAACAGATCAAATCAGCGTTCTATACTCTTCCCAAGgttttacattactccatttttattcttgctttggattctgcactgcatctaaatagaatactaatcttccctgaggaatagtagtggcctgaaagtcctg

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